View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_137 (Length: 261)

Name: NF18404_low_137
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_137
NF18404_low_137
[»] chr4 (11 HSPs)
chr4 (18-261)||(2621511-2621754)
chr4 (83-175)||(2373666-2373761)
chr4 (84-175)||(2368103-2368197)
chr4 (82-188)||(2471574-2471680)
chr4 (119-204)||(2382915-2383000)
chr4 (75-183)||(5102506-5102614)
chr4 (128-174)||(12124406-12124452)
chr4 (148-192)||(2167816-2167860)
chr4 (82-190)||(2477095-2477203)
chr4 (135-175)||(12126466-12126506)
chr4 (85-192)||(5106722-5106829)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 2621754 - 2621511
Alignment:
Q  18 agtatcgtcatctaaatagatattcctttgcttcattaaaaccaatcagtcacgaccacatctcgaagaaggttacagttcttgcagagagagttaacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621754 agtatcgtcatctaaatagatattcctttgcttcattaaaaccaatcagtcacgaccacatctcgaagaaggttacagttcttgcagagagagttaacat 2621655  T
Q  118 attggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaatcatagctagtagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621654 attggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaatcatagctagtagc 2621555  T
Q  218 aataacaggatggctaaggttgagttcttcgagtaaagggaaac 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2621554 aataacaggatggctaaggttgagttcttcgagtaaagggaaac 2621511  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 2373761 - 2373666
Alignment:
Q  83 aagaaggttacagttcttgcagagagagttaacatattggcgatc---gatgaaattacctgataaattaattttgcggagtttgggaagtgccaa 175  Q
    |||||||||||| || ||| ||||| |||||| | ||||| ||||   |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2373761 aagaaggttacaatttttgaagagatagttaatagattggtgatctttgatgcaattacctgataaattaatcttgcggagtttgggaagtgccaa 2373666  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 2368197 - 2368103
Alignment:
Q  84 agaaggttacagttcttgcagagagagttaacatattggcgatcgatga---aattacctgataaattaattttgcggagtttgggaagtgccaa 175  Q
    ||||||| |||||||||| ||||| |||||| | |||| |||||  |||   ||||||| ||||||||||| |||||||||||||||||||||||    
T  2368197 agaaggtcacagttcttgaagagatagttaatagattgtcgatctttgatccaattaccagataaattaatcttgcggagtttgggaagtgccaa 2368103  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 2471574 - 2471680
Alignment:
Q  82 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 181  Q
    ||||||||||||| ||||||||||||  | ||| | |||||||| | || || |||||  |||||| ||| |||||||||||||||||| |||||||  |    
T  2471574 gaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagtttgggaagttccaacaattg 2471673  T
Q  182 atcatca 188  Q
    |||||||    
T  2471674 atcatca 2471680  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 2383000 - 2382915
Alignment:
Q  119 ttggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaat 204  Q
    ||||| ||||||| |||||||  | |||||||| || |||||||||||||||||||| ||  ||| ||||||||||||| ||||||    
T  2383000 ttggctatcgatggaattaccatacaaattaatctttcggagtttgggaagtgccaaaaattgattatcatcatctagcacaaaat 2382915  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 5102614 - 5102506
Alignment:
Q  75 acatctcgaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgcca 174  Q
    |||||| ||||||||| ||||||| |||| |||  ||||| | |||||  | | ||||||||||  ||||||  ||| ||||||||||||||||||||||    
T  5102614 acatcttgaagaaggtcacagttcctgcaaagatggttaatagattgggtacctatgaaattacgagataaaacaatcttgcggagtttgggaagtgcca 5102515  T
Q  175 acaaccgat 183  Q
    |||| ||||    
T  5102514 acaatcgat 5102506  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 12124406 - 12124452
Alignment:
Q  128 gatgaaattacctgataaattaattttgcggagtttgggaagtgcca 174  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  12124406 gatgcaattaccagataaattaatcttgcggagtttgggaagtgcca 12124452  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 2167816 - 2167860
Alignment:
Q  148 taattttgcggagtttgggaagtgccaacaaccgatcatcatcat 192  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||    
T  2167816 taattttccggagtttgggaagtgccaaccatcgatcatcatcat 2167860  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 2477095 - 2477203
Alignment:
Q  82 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 181  Q
    |||||||||  ||||||||||||||| ||| || | || | ||| | |||||||||   ||||||  ||| ||||||||||||||||| ||||||||  |    
T  2477095 gaagaaggtcgcagttcttgcagagatagtcaatagatcgtcgacccatgaaattaggagataaagcaatcttgcggagtttgggaagcgccaacaattg 2477194  T
Q  182 atcatcatc 190  Q
    |||||||||    
T  2477195 atcatcatc 2477203  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 12126466 - 12126506
Alignment:
Q  135 ttacctgataaattaattttgcggagtttgggaagtgccaa 175  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  12126466 ttaccagataaattaatcttgcggagtttgggaagtgccaa 12126506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 5106829 - 5106722
Alignment:
Q  85 gaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatc 184  Q
    |||||| |||||||||||| |||  ||||| | |||||  | | | |||||||| ||||||   ||| ||||||||||||||||||||||| ||  ||||    
T  5106829 gaaggtcacagttcttgcaaagatggttaatagattggttacccaggaaattacgtgataacgcaatcttgcggagtttgggaagtgccaataattgatc 5106730  T
Q  185 atcatcat 192  Q
    ||||||||    
T  5106729 atcatcat 5106722  T

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