View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_138 (Length: 257)
Name: NF18404_low_138
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_138 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 20590381 - 20590148
Alignment:
| Q |
20 |
gtaattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttacttttcgg |
119 |
Q |
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| T |
20590381 |
gtaattaccaatgaatttgttttccgttgggggatgatgactcccactcttcttgatgtgtcgaccattcttaatttgtggacaagagtttacttttcgg |
20590282 |
T |
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| Q |
120 |
agtttcttcgcaagagctctattcctcgtggaataataaccgaacaagttttatgggaattgctagtttactacatgtagcttcaaataaaacttttgac |
219 |
Q |
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| T |
20590281 |
agtttcttcgcaagagctctattcctcgtggaataataaccaaacaagttttatgggaattgctagtttgctacctgtagcttcaactaaaacttttgac |
20590182 |
T |
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| Q |
220 |
gtgcatgtgcgcttatattttcttcgacatccga |
253 |
Q |
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| T |
20590181 |
gtgcctatgcgcttatattttcttcaacatccga |
20590148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 20621260 - 20621028
Alignment:
| Q |
21 |
taattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttacttttcgga |
120 |
Q |
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| T |
20621260 |
taattaccaatgaatttgttttcccttgggg-atgattactcccactcttcttgatgtgtcgaccattcttaatttgtggacaagagtttatttttcgta |
20621162 |
T |
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| Q |
121 |
gtttcttcgcaagagctctattcctcgtggaataataaccgaacaag-ttttatgggaattgctagtttactacatgtagcttcaaataaaacttttgac |
219 |
Q |
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| T |
20621161 |
gtttcttcgcaagagctccattcctcgtggaataataaccggaaaagtttttatgggaattgctagtttgctacctgtagcttcaactaaaacttttgac |
20621062 |
T |
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| Q |
220 |
gtgcatgtgcgcttatattttcttcgacatccga |
253 |
Q |
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||| |||||||||||||||| ||| |||||||| |
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| T |
20621061 |
atgcctgtgcgcttatattttattcaacatccga |
20621028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 12058045 - 12058143
Alignment:
| Q |
20 |
gtaattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttacttttcgg |
119 |
Q |
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||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| || |||||||||| |||||||||||||| |||||||||||| |
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| T |
12058045 |
gtaattaccaatgaatttgttttcccttggggg-tgattactcccactcttcttgatgtgttgaccattcttaatttgtggacaagaatttacttttcgg |
12058143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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