View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_143 (Length: 250)
Name: NF18404_low_143
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_143 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36152475 - 36152242
Alignment:
| Q |
1 |
gtaaaacatgagtttgccgataccaagagaaagttggaggcctttgttcaggtatgttgcatttttctccctctcgaataagcgacaacaacatgtccat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |
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| T |
36152475 |
gtaaaacatgagtttgccaataccaagagaaagttggaggcctttgttcaggtatgttacatttttctccctctcacataagcgacaacgacatgtccat |
36152376 |
T |
|
| Q |
101 |
gatagggcataactgcatgaactcttttagctctttaaaatgcaacttagatactaactgcatgaaggggaaacaattcttgagtttccaaagcatgtat |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36152375 |
gatagggcatagctgcatgaactcttttagctctttaaaatgcatcttagatactaactgcatgaaggggaaacaattcttgagtttccaaagca--tat |
36152278 |
T |
|
| Q |
201 |
gatatattaatatgtttgattactttgatcaatttg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36152277 |
gatatattaatatgtttgattactttgatcaatttg |
36152242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36157400 - 36157165
Alignment:
| Q |
1 |
gtaaaacatgagtttgccgataccaagagaaagttggaggcctttgttcaggtatgttgcatttttctccctctcgaataagcgacaacaacatgtccat |
100 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| || |||||||||| |
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| T |
36157400 |
gtaaaacatcagtttgctactaccaagagaaagttggagacctttgttcaggtatgttacatttttctccctctaacataagcgataatgacatgtccat |
36157301 |
T |
|
| Q |
101 |
gatagggcataactgcatgaactcttttagctctttaaaatgcaacttagatactaactgcatgaaggggaaacaattcttgagtttccaaagcatgtat |
200 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36157300 |
gatagggcgtagctgcatgaactcttttagctctttaaaatgcatcttagatactaactgcatgaaaaggaaacaattcttgagtttccaaagcatgtat |
36157201 |
T |
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| Q |
201 |
gatatattaatatgtttgattactttgatcaatttg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36157200 |
gatatattaatatgtttgattactttgatcaatttg |
36157165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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