View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_15 (Length: 651)
Name: NF18404_low_15
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 319 - 631
Target Start/End: Complemental strand, 2494587 - 2494275
Alignment:
| Q |
319 |
gttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccctccgcccctcacatgcttcttgctctctccgccgcctta |
418 |
Q |
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| T |
2494587 |
gttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccctccgcccctcacatgcttcttgctctctccgccgcctta |
2494488 |
T |
|
| Q |
419 |
ccggaaaacgttgcagctccaaaccaaactatgttgatgaattctcactctaacaattctagaaagcgtttcaggacaaagtttacacaagatcagaaag |
518 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
2494487 |
ccggaaaacgttgcagctccaaaccaaaccatgttgatgaattctcactctaacaattcaagaaagcgtttcaggacaaagtttacacaagatcagaagg |
2494388 |
T |
|
| Q |
519 |
ataagatgctgaaatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagttttgtaatgaaattggtgttgatcgtag |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494387 |
ataagatgctgaaatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagttttgtaatgaaattggtgttgatcgtag |
2494288 |
T |
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| Q |
619 |
tgttcttaaggtt |
631 |
Q |
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||||||||||||| |
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| T |
2494287 |
tgttcttaaggtt |
2494275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 85 - 253
Target Start/End: Complemental strand, 2494818 - 2494650
Alignment:
| Q |
85 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaacagcaacaccaaccgacccaaca |
184 |
Q |
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| T |
2494818 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggctgtggtgaattcatgacatcaccaacagcaacaccaaccgacccaaca |
2494719 |
T |
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| Q |
185 |
tccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagccaccactc |
253 |
Q |
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| T |
2494718 |
tccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagccaccactc |
2494650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 85 - 243
Target Start/End: Complemental strand, 3684081 - 3683923
Alignment:
| Q |
85 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaacagcaacaccaaccgacccaaca |
184 |
Q |
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|||||||||||||||||| | |||| ||||||||||||||||||||| || ||| ||||||||||| |||||||||| || || | ||||| | |
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| T |
3684081 |
agaatgtctcaaaaaccacgtggcaaccctaggtggtcatgccctagacggttgttgtgaattcatgccatcaccaaccgccacctccgatgaccctgcc |
3683982 |
T |
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| Q |
185 |
tccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaaga |
243 |
Q |
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||| |||||||||| || ||||| || ||||| || ||||||||||||||||| ||||| |
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| T |
3683981 |
tccataaaatgtgccgcatgtggttgtcaccggaatttccaccgccgtgaaccggaaga |
3683923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 624
Target Start/End: Complemental strand, 3683641 - 3683548
Alignment:
| Q |
531 |
aatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagttttgtaatgaaattggtgttgatcgtagtgttct |
624 |
Q |
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|||||||||| ||||||||||||||||||||||| | |||||| ||| | || ||| ||||| |||||| ||||||||||| | |||||||| |
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| T |
3683641 |
aatttgctgataaagttgggtggaagatgcagaagagagatgaagaaatggtgaatggtttttgcaatgaagttggtgttgatagaagtgttct |
3683548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 24181069 - 24181229
Alignment:
| Q |
85 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaac-agcaacaccaaccgacccaac |
183 |
Q |
| |
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||||||||||||||| ||||| ||| ||||||||| ||||| || ||||||||||||||||||||| || || || | ||| |||| ||||| | |
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| T |
24181069 |
agaatgtctcaaaaatcatgctgcatccctaggtggacatgcacttgatggatgtggtgaattcatgccaccatcatctctcaatcccaa-tgaccctag |
24181167 |
T |
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| Q |
184 |
atccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagc |
245 |
Q |
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|||| | |||||||||||||||||||| ||||| || |||||||||||||| ||| |||||| |
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| T |
24181168 |
atccctcaaatgtgctgcttgtggctgtcaccggaatttccaccgccgtgagccacaagagc |
24181229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 14021876 - 14021837
Alignment:
| Q |
189 |
taaaatgtgctgcttgtggctgccaccgtaacttccaccg |
228 |
Q |
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| T |
14021876 |
taaaatgtgctgcttgtaactgccaccgtaacttccaccg |
14021837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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