View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_low_153 (Length: 245)
Name: NF18404_low_153
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_153 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 47892767 - 47892540
Alignment:
| Q |
1 |
tacaagttgcagcaaatgaataattaaatatagtaagattcttagtggaacaaaatattgaggataaggtcggccttgtcagcttcgccatccgtgtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47892767 |
tacaagttgcagcaaatgaataattaaatatagtaagattcttagtggaacaaaatattgaggataaggtcggccttgtcagcttcgccatccgtgtcat |
47892668 |
T |
|
| Q |
101 |
atgtttaatctggttttggataaacccttgtgcgttattattaatacaagcaatttgtgttggagataagtttttctattagttcttcttcatcatcact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
47892667 |
atgtttaatctggttttggataaacccttgtgcgttattattaatacaagcaatttgtgttggagataagttattctattagtt---cttcatcatcact |
47892571 |
T |
|
| Q |
201 |
aagttaactagatcttggatacgaaataatt |
231 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
47892570 |
aagttaactagatcttggacacgaaataatt |
47892540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University