View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_low_159 (Length: 239)
Name: NF18404_low_159
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_159 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 52796961 - 52796727
Alignment:
| Q |
1 |
cccacgaaactgcaagagcacatccaagaagtctttactgtttccatttccaacagtatcattttccatcctttgtttgatgaaccatcctgctatctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52796961 |
cccacgaaactgcaagagcacatccaagaagtctttactgtttccatttccaacaatatcattttccatcctttgtttgatgaaccatcctgctatctca |
52796862 |
T |
|
| Q |
101 |
aaagctctctcaacatggaactgtgtgtttctccttataccttgagggtcaagccacttcaatatggggaagaaatccgcaacgttgggtttcccagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52796861 |
aaagctctctcaacatggaactgtgtgtttctccttataccttgagggtcaagccacttcaatatggggaagaaatccgcaacgttgggtttcccagcat |
52796762 |
T |
|
| Q |
201 |
atttcataaccttaatcgcatgatagtataatcta |
235 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |
|
|
| T |
52796761 |
atttcataaccttaatcgcatgataatagaatcta |
52796727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University