View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_160 (Length: 237)
Name: NF18404_low_160
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_160 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30394880 - 30395100
Alignment:
| Q |
1 |
aaactgccctcagattttcggattattcaatatgctactcttattttcaactcttcctttgaggtccaactcgattagtctcttcagtggttcagttgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30394880 |
aaactgccctcagattttcggattattcaatatgctactcttattttcaactcttcctttgaggtccaactcgattagtctcttcagtggttcagttgtg |
30394979 |
T |
|
| Q |
101 |
atttttcctcttaagtccaactagattagtctctttagcggtccagttgtaaagtcgatttgtgacaataccttatatgcatctatgttaggattgatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30394980 |
atttttcctcttaagtccaactagattagtctctttagcggtccagttataaagtcgatttgtgacaataccttatatgcatctatgttaggattgatac |
30395079 |
T |
|
| Q |
201 |
gagctgttagtgggttctgat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
30395080 |
gagctgttagtgggttctgat |
30395100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30472326 - 30472546
Alignment:
| Q |
1 |
aaactgccctcagattttcggattattcaatatgctactcttattttcaactcttcctttgaggtccaactcgattagtctcttcagtggttcagttgtg |
100 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30472326 |
aaactgccctcagattttcggattatacaatatgctactcttattttcaactcttcctttgaggtccaactcgattagtctcttcagtggttcagttgtg |
30472425 |
T |
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| Q |
101 |
atttttcctcttaagtccaactagattagtctctttagcggtccagttgtaaagtcgatttgtgacaataccttatatgcatctatgttaggattgatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30472426 |
atttttcctcttaagtccaactagattagtctctttagcggtccagttataaagtcgatttgtgacaataccttatatgcatctatgttaggattgatac |
30472525 |
T |
|
| Q |
201 |
gagctgttagtgggttctgat |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
30472526 |
gagctgttagtaggttctgat |
30472546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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