View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_low_161 (Length: 237)
Name: NF18404_low_161
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_161 |
 | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 348900 - 349075
Alignment:
| Q |
42 |
aaattagttgtgaaagaacaatttatacaagtaaaaaattgtttgaaccattgaagtctagaaaaatttaagcgaaaatttgtaactcctttaaacatat |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
348900 |
aaattagttgtgaaagaacaatttatacaagtaaaa-attgtttgaaccattgaagtctagaaaaatttaagcgaaaatttgtaactcctttaaacatat |
348998 |
T |
|
| Q |
142 |
tcattagctcctccctcccactactcaatgtgnnnnnnngtactgaccactcatgctaaaaatcgggataaatattgttag |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
348999 |
tcattagct----cctcccactactcaatgtgtttttttgtaccgaccactcatgctaaaaatcgggataaatattgttag |
349075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 348696 - 348739
Alignment:
| Q |
1 |
atttttcaccaccatatttatttggtctttatagtaaacttaaa |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
348696 |
atttttcaccaccatatttatttggtctttgtagtaaacttaaa |
348739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 43505065 - 43504883
Alignment:
| Q |
42 |
aaattagttgtgaaagaacaatttatacaagtaaaaaattgtttgaaccattgaagtctagaaaaatttaagcgaaaatt-tgtaactcctttaaacata |
140 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||| | |||| |
|
|
| T |
43505065 |
aaattagttgtgaaaggactatttattcaagtaaaaa-ttgtttgaatcattgaagtctagaaaaatttacacgaaaattgtgtaactccttttaccata |
43504967 |
T |
|
| Q |
141 |
ttcatt-----agctcctccctcccactactca-atgtgnnnnnnngtactgaccactcatgctaaaaatcgggataaatattgttag |
222 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43504966 |
ttcatttttaaagct----cctcccactactcatatgtgtttttttgtactgaccactcatgctaaaaatcgggaaaaatattgttag |
43504883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 39070772 - 39070668
Alignment:
| Q |
42 |
aaattagttgtgaaagaacaatttatacaagtaaaaaattgtttgaaccattgaagtctagaaaaatttaagcgaaaatt-tgtaactcctttaaacata |
140 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||| ||||||||| |||||||| ||||||||||||| | ||||| |||||||||||| | |||| |
|
|
| T |
39070772 |
aaattagttgtgaaaggactatttattcaagtaaaaa-ttgtttgaatcattgaagcctagaaaaatttacacataaattgtgtaactccttttaccata |
39070674 |
T |
|
| Q |
141 |
ttcatt |
146 |
Q |
| |
|
|||||| |
|
|
| T |
39070673 |
ttcatt |
39070668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 39070624 - 39070591
Alignment:
| Q |
187 |
accactcatgctaaaaatcgggataaatattgtt |
220 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
39070624 |
accactcatgctaaaaatcgggaaaaatattgtt |
39070591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25207 - 25166
Alignment:
| Q |
1 |
atttttcaccaccatatttatttggtctttatagtaaactta |
42 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
25207 |
attttttaccaccatatttatttgatctttgtagtaaactta |
25166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11313 - 11354
Alignment:
| Q |
1 |
atttttcaccaccatatttatttggtctttatagtaaactta |
42 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
11313 |
attttttaccaccatatttatttgatctttgtagtaaactta |
11354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14828396 - 14828355
Alignment:
| Q |
1 |
atttttcaccaccatatttatttggtctttatagtaaactta |
42 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
14828396 |
attttttaccaccatatttatttgatctttgtagtaaactta |
14828355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University