View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_164 (Length: 236)
Name: NF18404_low_164
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_164 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 43503566 - 43503359
Alignment:
| Q |
12 |
cagagacatttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgatagtttaat |
111 |
Q |
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| T |
43503566 |
cagagacatttggtgatttgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgatagtttaat |
43503467 |
T |
|
| Q |
112 |
caagctaaacttagagcagaaccctattgaattgccacctatggagactgtaaatgaaggtgtccaagccatcaagtcttacatggccaagaggtggatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43503466 |
caagctaaacttagagcagaaccctattgaattgccacctatggagattgtaaatgaaggtgtccaagccatcaagtcttacatggccaagaggtggatt |
43503367 |
T |
|
| Q |
212 |
gacatatt |
219 |
Q |
| |
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|| ||||| |
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|
| T |
43503366 |
gatatatt |
43503359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 34564450 - 34564250
Alignment:
| Q |
12 |
cagagacatttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgatagtttaat |
111 |
Q |
| |
|
||||||||||||| || ||| || ||||||||||||||| | || || ||||| |||||||||||||| ||||||||||| ||||||||| ||| | |
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| T |
34564450 |
cagagacatttggcgaattgactaatctcaaggaattggatgtcagtaataatcagattcatgcacttccagatacatttggttgccttgataatttgac |
34564351 |
T |
|
| Q |
112 |
caagctaaacttagagcagaaccctattgaattgccacctatggagactgtaaatgaaggtgtccaagccatcaagtcttacatggccaagaggtggatt |
211 |
Q |
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|||||| ||||| || ||||| ||| ||||| ||||||| |||||| |||||| |||| ||||||||||| || ||| |||||||||||||||||| |
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| T |
34564350 |
caagctcaacttggaacagaatcctcttgaactgccaccagtggagattgtaaaccaaggggtccaagccataaaaacttttatggccaagaggtggatt |
34564251 |
T |
|
| Q |
212 |
g |
212 |
Q |
| |
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| |
|
|
| T |
34564250 |
g |
34564250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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