View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_171 (Length: 232)

Name: NF18404_low_171
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_171
NF18404_low_171
[»] chr4 (8 HSPs)
chr4 (17-181)||(14143260-14143424)
chr4 (182-220)||(9399295-9399333)
chr4 (182-220)||(15018316-15018354)
chr4 (182-220)||(15019956-15019994)
chr4 (182-220)||(13518636-13518674)
chr4 (182-220)||(39488826-39488864)
chr4 (182-220)||(46690478-46690516)
chr4 (183-220)||(13518100-13518137)
[»] chr7 (8 HSPs)
chr7 (181-220)||(24790191-24790230)
chr7 (182-220)||(24790092-24790130)
chr7 (182-220)||(9647611-9647649)
chr7 (182-220)||(40998895-40998933)
chr7 (182-220)||(41000755-41000793)
chr7 (185-220)||(7842649-7842684)
chr7 (183-220)||(9596112-9596149)
chr7 (183-220)||(9647075-9647112)
[»] chr5 (5 HSPs)
chr5 (182-220)||(245114-245152)
chr5 (182-220)||(38936687-38936725)
chr5 (182-220)||(29949556-29949595)
chr5 (182-220)||(29951194-29951233)
chr5 (182-220)||(21352763-21352801)
[»] chr1 (4 HSPs)
chr1 (182-220)||(36233278-36233316)
chr1 (182-220)||(36234032-36234070)
chr1 (182-220)||(20191106-20191144)
chr1 (182-220)||(20759076-20759114)
[»] scaffold0096 (1 HSPs)
scaffold0096 (184-220)||(22371-22407)
[»] chr3 (7 HSPs)
chr3 (181-220)||(5553167-5553206)
chr3 (181-220)||(25531605-25531644)
chr3 (182-220)||(5554467-5554505)
chr3 (182-220)||(23460172-23460210)
chr3 (182-220)||(13041900-13041938)
chr3 (182-220)||(13049977-13050015)
chr3 (182-220)||(47566446-47566484)
[»] scaffold0026 (2 HSPs)
scaffold0026 (182-220)||(738-776)
scaffold0026 (182-220)||(86553-86591)
[»] scaffold0021 (2 HSPs)
scaffold0021 (182-220)||(17627-17665)
scaffold0021 (182-220)||(27158-27196)
[»] scaffold0018 (1 HSPs)
scaffold0018 (182-220)||(761-799)
[»] chr8 (4 HSPs)
chr8 (182-220)||(8366077-8366115)
chr8 (185-220)||(17278350-17278385)
chr8 (182-220)||(17277647-17277685)
chr8 (187-220)||(17277384-17277417)
[»] chr6 (2 HSPs)
chr6 (182-220)||(12037095-12037133)
chr6 (182-220)||(12036986-12037024)
[»] chr2 (6 HSPs)
chr2 (182-220)||(22299660-22299698)
chr2 (182-220)||(22300572-22300610)
chr2 (182-220)||(24806059-24806097)
chr2 (182-220)||(24806961-24806999)
chr2 (182-220)||(24808817-24808855)
chr2 (181-220)||(31974169-31974208)
[»] scaffold0359 (1 HSPs)
scaffold0359 (184-220)||(8938-8974)
[»] scaffold0269 (1 HSPs)
scaffold0269 (182-220)||(2043-2081)
[»] scaffold0025 (1 HSPs)
scaffold0025 (182-220)||(54826-54864)
[»] scaffold0013 (1 HSPs)
scaffold0013 (184-220)||(241018-241054)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 14143260 - 14143424
Alignment:
Q  17 agcatacacagccacaacaccaaaagacttattattatcatggacagaaaaagctacaaattgatcactaatttgatgaataatagggtgatgatcaatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14143260 agcatacacagccacaacaccaaaagacttattattatcatggacagaaaaagctacaaattgatcactaatttgatgaataatagggtgatgatcaatg 14143359  T
Q  117 gcacaaatacaccataaattaggtttaaggtgatttctgttgttcaaagataaaagcttcagacc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14143360 gcacaaatacaccataaattaggtttaaggtgatttctgttgttcaaagataaaagcttcagacc 14143424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 9399333 - 9399295
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9399333 tgatgtgatcctaaaattatctctcttgacaagaataat 9399295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 15018354 - 15018316
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15018354 tgatgtgatcctaaaattatctctcttgacaagaataat 15018316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 15019994 - 15019956
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15019994 tgatgtgatcctaaaattatctctcttgacaagaataat 15019956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 13518674 - 13518636
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13518674 tgatgtgatcctaaaattctctctcttgacaagaataat 13518636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 39488864 - 39488826
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  39488864 tgatgtgatcctaaaattctctctcttgaaaagaataat 39488826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 46690478 - 46690516
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  46690478 tgatgtgatcctaaaattctctctcttgataagaataat 46690516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 13518137 - 13518100
Alignment:
Q  183 gatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  13518137 gatgtgatcctaaaattctctctcttgacaataataat 13518100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 24790230 - 24790191
Alignment:
Q  181 ctgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24790230 ctgatgtgatcctaaaattatctctcttgacaagaataat 24790191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 24790092 - 24790130
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24790092 tgatgtgatcctaaaattatctctcttgacaagaataat 24790130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 9647649 - 9647611
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9647649 tgatgtgatcctaaaattctctctcttgacaagaataat 9647611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 40998933 - 40998895
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  40998933 tgatgtgatcctaaaattctctctcttgacaagaataat 40998895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 41000793 - 41000755
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  41000793 tgatgtgatcctaaaattctctctcttgacaagaataat 41000755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 7842649 - 7842684
Alignment:
Q  185 tgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||| ||||||||||||||||||||    
T  7842649 tgtgatcctaaaattctctctcttgacaagaataat 7842684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 9596149 - 9596112
Alignment:
Q  183 gatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  9596149 gatgtgatcctaaaattctctctcttgacaataataat 9596112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 9647112 - 9647075
Alignment:
Q  183 gatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  9647112 gatgtgatcctaaaattctctctcttgacaataataat 9647075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 245152 - 245114
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  245152 tgatgtgatcctaaaattatctctcttgacaagaataat 245114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 38936687 - 38936725
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  38936687 tgatgtgatcctaaaattctctctcttgacaagaataat 38936725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 29949556 - 29949595
Alignment:
Q  182 tgatgtgatcctaaaa-ttatctctcttgacaagaataat 220  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29949556 tgatgtgatcctaaaaattatctctcttgacaagaataat 29949595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 29951194 - 29951233
Alignment:
Q  182 tgatgtgatcctaaaa-ttatctctcttgacaagaataat 220  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29951194 tgatgtgatcctaaaaattatctctcttgacaagaataat 29951233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 21352801 - 21352763
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  21352801 tgatgtgatcctaaaattctctctcttgaaaagaataat 21352763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 36233278 - 36233316
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36233278 tgatgtgatcctaaaattatctctcttgacaagaataat 36233316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 36234070 - 36234032
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36234070 tgatgtgatcctaaaattatctctcttgacaagaataat 36234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 20191144 - 20191106
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  20191144 tgatgtgaacctaaaattatctctcttgaaaagaataat 20191106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 20759076 - 20759114
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  20759076 tgatgtgatcctaaaattctctcccttgacaagaataat 20759114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 22371 - 22407
Alignment:
Q  184 atgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  22371 atgtgatcctaaaattatctctcttgacaagaataat 22407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 5553167 - 5553206
Alignment:
Q  181 ctgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  5553167 ctgatgtgatcctaaaattctctctcttgacaagaataat 5553206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 25531605 - 25531644
Alignment:
Q  181 ctgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  25531605 ctgatgtgatcctaaaattctctctcttgacaagaataat 25531644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 5554505 - 5554467
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  5554505 tgatgtgatcctaaaattctctctcttgacaagaataat 5554467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 23460172 - 23460210
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  23460172 tgatgtgatcctaaaattctctctcttgacaagaataat 23460210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 13041900 - 13041938
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  13041900 tgatatgatcctaaaattctctctcttgacaagaataat 13041938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 13049977 - 13050015
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  13049977 tgatatgatcctaaaattctctctcttgacaagaataat 13050015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 47566446 - 47566484
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  47566446 tgatgtgatcctaaaattctctttcttgacaagaataat 47566484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 776 - 738
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  776 tgatgtgatcctaaaattctctctcttgacaagaataat 738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 86553 - 86591
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  86553 tgatgtgatcctaaaattctctcttttgacaagaataat 86591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 17627 - 17665
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  17627 tgatgtgatcctaaaattctctctcttgacaagaataat 17665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 27158 - 27196
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  27158 tgatgtgatcctaaaattctctctcttgacaagaataat 27196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 799 - 761
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  799 tgatgtgatcctaaaattctctctcttgacaagaataat 761  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 8366077 - 8366115
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  8366077 tgatgtgatcctaaaattctctctcttgacaagaataat 8366115  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 17278385 - 17278350
Alignment:
Q  185 tgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17278385 tgtgatcctaaaattctctctcttgacaagaataat 17278350  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 17277647 - 17277685
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  17277647 tgatgtgatcctaaatttctctctcttgacaagaataat 17277685  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 17277384 - 17277417
Alignment:
Q  187 tgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||| ||||||||||||||||||||    
T  17277384 tgatcctaaaattctctctcttgacaagaataat 17277417  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 12037133 - 12037095
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  12037133 tgatgtgatcctaaaattctctctcttgacaagaataat 12037095  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 12036986 - 12037024
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  12036986 tgatgtgatcctaaaattctctctcttaacaagaataat 12037024  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 22299660 - 22299698
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22299660 tgatgtgatcctaaaattctctctcttgacaagaataat 22299698  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 22300610 - 22300572
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22300610 tgatgtgatcctaaaattctctctcttgacaagaataat 22300572  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 24806059 - 24806097
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24806059 tgatgtgatcctaaaattctctctcttgacaagaataat 24806097  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 24806999 - 24806961
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24806999 tgatgtgatcctaaaattctctctcttgacaagaataat 24806961  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 24808855 - 24808817
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24808855 tgatgtgatcctaaaattctctctcttgacaagaataat 24808817  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 31974208 - 31974169
Alignment:
Q  181 ctgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  31974208 ctgatgtgatcctaaaattctctctcttgaaaagaataat 31974169  T

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Target: scaffold0359 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 8974 - 8938
Alignment:
Q  184 atgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8974 atgtgatcctaaaattctctctcttgacaagaataat 8938  T

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Target: scaffold0269 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 2081 - 2043
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  2081 tgatgtgatcctaaaattctctctctcgacaagaataat 2043  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 54826 - 54864
Alignment:
Q  182 tgatgtgatcctaaaattatctctcttgacaagaataat 220  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  54826 tgatgtgatcctaaagttctctctcttgacaagaataat 54864  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 241018 - 241054
Alignment:
Q  184 atgtgatcctaaaattatctctcttgacaagaataat 220  Q
    |||||||||||||||| |||||||| |||||||||||    
T  241018 atgtgatcctaaaattctctctcttaacaagaataat 241054  T

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