View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_172 (Length: 232)
Name: NF18404_low_172
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_172 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 52029723 - 52029524
Alignment:
| Q |
18 |
aaaatcgatgcaggttcttaattcaggtggttcgggctgttgtttctggtattggagctgaaagagttggtgtcagaatttcaccagcaattgatcacaa |
117 |
Q |
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| T |
52029723 |
aaaatcgatgcaggttcttaattcaggtggttcgggctgttgtttctggtattggagctgaaagagttggtgtcagaatttcaccagcaattgatcacaa |
52029624 |
T |
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| Q |
118 |
tgatgctattgattctgatccacttggattaggcttagcagtgatcgagagactaaacaatctccaaaaagagcttggtagaaaacttacgtatcttcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52029623 |
tgatgctattgattctgatccacttggattaggcttagcagtgattgagagactaaacaatctccaaaaagagcttggtagaaaacttacgtatcttcat |
52029524 |
T |
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