View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_176 (Length: 227)
Name: NF18404_low_176
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_176 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27813677 - 27813449
Alignment:
| Q |
1 |
tacttgtgtacattggtcggggcagattttgttatgtggtgccactgcagtagataactttacctgaaatattgataactttctgaaatagttttaagag |
100 |
Q |
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| T |
27813677 |
tacttgtgtacattggtcggggctgattttgttatgtagtgccactgcagtagataactttacctgaaatattgataactttctgaaatagttttaa--- |
27813581 |
T |
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| Q |
101 |
gagctattagaaacctctaatagcgtaaaggtatcctttctgtttgcattgataatattgcatac-----ttttagattttttgttgttagtcgcagatt |
195 |
Q |
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| T |
27813580 |
gagctattagaaacctccaatagtgtaaaggtatcctttctgtttgcattgataatattgcatactctggttttagattgtttgttgttagtcgcagatt |
27813481 |
T |
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| Q |
196 |
ttgattaatttaagattaattaagctctttat |
227 |
Q |
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| T |
27813480 |
ttgattaatttaagattaattaagctctttat |
27813449 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 31481744 - 31481696
Alignment:
| Q |
4 |
ttgtgtacattggtcgg-ggcagattttgttatgtggtgccactgcagt |
51 |
Q |
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| T |
31481744 |
ttgtgtacattggtcggaggctgattttgttatgtggtgccactgcagt |
31481696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 6761872 - 6761839
Alignment:
| Q |
123 |
gcgtaaaggtatcctttctgtttgcattgataat |
156 |
Q |
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| T |
6761872 |
gcgtaaaggtaccctttctgtttgcattgataat |
6761839 |
T |
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