View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_178 (Length: 226)
Name: NF18404_low_178
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_178 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 52686687 - 52686907
Alignment:
| Q |
6 |
aaaagatagttataagatggatgtttatacgattttaaatatgttgtcaacgtttagatgttcatataataccactctaacattttaaaaaagaacaatg |
105 |
Q |
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| T |
52686687 |
aaaagatagttataagatggatgtttatacgattttaaatatgttgtcaatgtttagatgtttatataataccactctaacattttaaaaaagaataatg |
52686786 |
T |
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| Q |
106 |
ttatttgaacatccaaaactcaacaacgtatttgacaatcatagaaaaatacaccatttataattaataataagagtaaaagagaaaatcaaataatgcc |
205 |
Q |
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| T |
52686787 |
ttatttgaacatccaaaactcaacaacgtatttgacaatcatagaaaaatacaccatttataattaataatacgagttaaagagaaaatcaaataatgcc |
52686886 |
T |
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| Q |
206 |
taatccatataaatatacact |
226 |
Q |
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||||||||||||||||||||| |
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| T |
52686887 |
taatccatataaatatacact |
52686907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 50229787 - 50229858
Alignment:
| Q |
102 |
aatgttatttgaacatccaaaactcaacaacgtatttgacaatca-tagaaaaatacaccatttataattaat |
173 |
Q |
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| T |
50229787 |
aatgttatttgaacatccaaaaaacaacaac-tatttgataataagtataaaaatacacaatttataactaat |
50229858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 4666785 - 4666851
Alignment:
| Q |
102 |
aatgttatttgaacatccaaaactcaacaacgtatttgacaatcatagaaaaatacaccatttataa |
168 |
Q |
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| T |
4666785 |
aatgttatttgaacaaccaaaacttgacaacgtatttgacaaccatataaaaatacaccatttataa |
4666851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 17102496 - 17102564
Alignment:
| Q |
102 |
aatgttatttgaacatccaaaactcaacaacgtatttgacaatcatagaaaaatacaccatttataatt |
170 |
Q |
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| T |
17102496 |
aatgttatttgaacaacaaaaatttgacaacttatttgacaagaatataaaaatacacaatttataatt |
17102564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 28629217 - 28629177
Alignment:
| Q |
102 |
aatgttatttgaacatccaaaactcaacaacgtatttgaca |
142 |
Q |
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| T |
28629217 |
aatgttatttgaacaatcaaaacttaacaacgtatttgaca |
28629177 |
T |
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