View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_181 (Length: 221)

Name: NF18404_low_181

Description: NF18404

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18404_low_181

[»] chr5 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 176; E-Value: 6e-95

Query Start/End: Original strand, 15 - 198

Target Start/End: Complemental strand, 11635248 - 11635065

Alignment:

Q	15	aatataagcaattgaaatatatacaagaaaaaagattcttttatcaattattattacttctcaactatgaattcaaggagctcatctgtggcaaaatact	114	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11635248	aatatacgcaattgaaatatatacaagaaaaaagattcttttatcaattattattacttctcaactatgaattcaaggagctcatctgtggcaaaatact	11635149	T

Q	115	caacagaaatctcttctaaatgaccgcagcttcgttcaacagcataatgacagatctctggcaaatttgcattaaagtaactgc	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11635148	caacagaaatctcttctaaatgaccgcagcttcgttcaacagcataatgacagatctctgggaaatttgcattaaagtaactgc	11635065	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 67 - 161

Target Start/End: Complemental strand, 29857090 - 29856996

Alignment:

Q	67	attacttctcaactatgaattcaaggagctcatctgtggcaaaatactcaacagaaatctcttctaaatgaccgcagcttcgttcaacagcataa	161	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29857090	attacttctcagctatgaattcaaggagttcatcagttacagaatactcaatattgatgtcttcaagatgaccgcaacttcgttcaacagcataa	29856996	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]