View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_191 (Length: 208)
Name: NF18404_low_191
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_191 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 10192919 - 10192723
Alignment:
| Q |
1 |
tcaaagaattcaactccttcattttgctctagctnnnnnnnttctactccctcaaattcttccttcacaatcatcaccatgaaatgttttacaaacatgt |
100 |
Q |
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| T |
10192919 |
tcaaagaactcaactccttcattttgctctagctcccccccttctactccctcgaattcttccttcacaatcatcaccatgaaatgttttacaaacatgt |
10192820 |
T |
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| Q |
101 |
gaaggtgtgaannnnnnnatcacaagtgaagcagagttcctccttctgaaatagatcaaatcctcttcgccttgttcttattagccacttctccttt |
197 |
Q |
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| T |
10192819 |
gaaggtgtgaatttttttatcacaagtgaagcagagttcctccttctgaaatagatcaaatcctcttcgccttgttcttattagccacttctccttt |
10192723 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 19460816 - 19460866
Alignment:
| Q |
140 |
ctccttctgaaatagatcaaatcctcttcgccttgttcttattagccactt |
190 |
Q |
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| T |
19460816 |
ctccttctgaaatagatcaaatcctcttccccttgttcttatcagtcactt |
19460866 |
T |
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