View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_2 (Length: 1252)

Name: NF18404_low_2
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_2
NF18404_low_2
[»] chr8 (17 HSPs)
chr8 (1001-1236)||(2930470-2930705)
chr8 (1001-1233)||(3012065-3012297)
chr8 (647-849)||(2931067-2931269)
chr8 (647-849)||(3011498-3011700)
chr8 (647-850)||(37796567-37796770)
chr8 (1001-1158)||(2947195-2947352)
chr8 (647-818)||(2947751-2947922)
chr8 (1042-1182)||(2921146-2921286)
chr8 (647-850)||(2921718-2921921)
chr8 (1018-1170)||(37796040-37796192)
chr8 (846-925)||(2930955-2931030)
chr8 (927-999)||(2930760-2930831)
chr8 (880-924)||(2947603-2947647)
chr8 (596-644)||(2931991-2932038)
chr8 (849-924)||(3011740-3011814)
chr8 (880-925)||(2921578-2921623)
chr8 (932-999)||(3011944-3012010)
[»] chr3 (2 HSPs)
chr3 (1001-1220)||(1506377-1506596)
chr3 (647-849)||(1505813-1506015)
[»] chr6 (3 HSPs)
chr6 (647-851)||(4915561-4915765)
chr6 (1001-1067)||(4916125-4916191)
chr6 (880-924)||(4915830-4915874)
[»] chr2 (2 HSPs)
chr2 (1001-1182)||(28025023-28025204)
chr2 (647-850)||(28025565-28025768)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 8e-92; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 8e-92
Query Start/End: Original strand, 1001 - 1236
Target Start/End: Complemental strand, 2930705 - 2930470
Alignment:
Q  1001 ggtttcaaaacacgagctgaatgtttcttgtatgatccagtgtggggttgcattttagaggtattcaatggtattcctgttattgatcataaattttatg 1100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||| || | ||||||||||||||||||| |||||||    
T  2930705 ggtttcaaaacaccagctgaatgtttcttgtatgatccagtgtggggctgcattctggaggtattcattgatcttcctgttattgatcataacttttatg 2930606  T
Q  1101 gggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaa 1200  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| || ||||||||    
T  2930605 gggcgaagattttctcttacaaagacgaactgaggcaaatcggggtggtggttgattatggaaatgctataaaaaagttttcaagtctctttgaacgaaa 2930506  T
Q  1201 ggcattggaaacttcaattagccaaaaacatgttat 1236  Q
    |||||||||||||||||||| |||||||||||||||    
T  2930505 ggcattggaaacttcaattaaccaaaaacatgttat 2930470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 3e-73
Query Start/End: Original strand, 1001 - 1233
Target Start/End: Original strand, 3012065 - 3012297
Alignment:
Q  1001 ggtttcaaaacacgagctgaatgtttcttgtatgatccagtgtggggttgcattttagaggtattcaatggtattcctgttattgatcataaattttatg 1100  Q
    |||||||| |||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||| |    
T  3012065 ggtttcaagacaccagctgaatgtttcttgtacgatccagtgtggggctgcattttggaggtattcaatggtctccctgttattgatcataaattttacg 3012164  T
Q  1101 gggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaa 1200  Q
    || |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||| || |||| |||    
T  3012165 ggcagaagattttctcttttaaagatgaactgaggcaaatcggggtggtggttgattttggaaatgctatcaaaaaatttgctagtctgtttgaacaaaa 3012264  T
Q  1201 ggcattggaaacttcaattagccaaaaacatgt 1233  Q
    |||||  ||| ||||||||| |||| |||||||    
T  3012265 ggcatcagaagcttcaattaaccaacaacatgt 3012297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 647 - 849
Target Start/End: Complemental strand, 2931269 - 2931067
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  2931269 ttctatggagagagaataaatgagtacaaagaggaattgaaaacaattggagttatgttcaattgtgaggaagcatgtgaatttattggaaaagaactaa 2931170  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||  |||||||| |||| | ||| ||| | ||||||||||||||    
T  2931169 tgtctcgtgctgcttctttctcattaagtaggagtcatgttcttttgattcttaacttcgtccaatatatccggacaaaccttcttcctttggacaattt 2931070  T
Q  847 tgt 849  Q
    |||    
T  2931069 tgt 2931067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 647 - 849
Target Start/End: Original strand, 3011498 - 3011700
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| || |    
T  3011498 ttctatggggatagaataaatgaatacaaagaggagttgaaaacaattggagtgatgttcaattgtgaggaagcatgtggattcattggaagagagctca 3011597  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| ||||| ||||| |||||  |||| || ||| |||||||||||||||||||||| ||||||||||||   |||| |||| | ||||||||||||||    
T  3011598 tgtctcgtgcagcttcattctcactaagcaggagtgatgttcttttgatgcttaacttcatccaatatctcaagaaaagtcttcttcctttggacaattt 3011697  T
Q  847 tgt 849  Q
    |||    
T  3011698 tgt 3011700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 647 - 850
Target Start/End: Complemental strand, 37796770 - 37796567
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||| |||||| |    
T  37796770 ttctatggggatagaataaacaagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgtaaattcattggaagagaactga 37796671  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| || ||  |||| ||| |||||||||  | |||||| |||||||||||||| || |||||||||||| | | || |||| | || |||||||| ||    
T  37796670 tgtctcgcgcatcttccttcactttaagtaagaatcatgtccttttgatgcttaaattcatccaatatctcaggagaagtcttctcccattggacaaatt 37796571  T
Q  847 tgtg 850  Q
    ||||    
T  37796570 tgtg 37796567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 1001 - 1158
Target Start/End: Complemental strand, 2947352 - 2947195
Alignment:
Q  1001 ggtttcaaaacacgagctgaatgtttcttgtatgatccagtgtggggttgcattttagaggtattcaatggtattcctgttattgatcataaattttatg 1100  Q
    ||||||||| ||| |  |||||||||||||||  ||| ||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  2947352 ggtttcaaagcaccatgtgaatgtttcttgtacaatcaagtgtggggatgcattttggaggtattcaatggtattcctattattgaccataaattttatg 2947253  T
Q  1101 gggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgattt 1158  Q
    | ||||||||||||  ||||||||||||| | | |||||| |||||| ||||||||||    
T  2947252 gagagaagattttcagttacaaagatgaattaaagcaaataggggtgctggttgattt 2947195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 647 - 818
Target Start/End: Complemental strand, 2947922 - 2947751
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||| |||||||||| ||||||||| ||||| |||| | ||||||||| |||  | |||| | ||| |||| | |||||||||| ||| ||||    
T  2947922 ttctatggggaaagaataaatgcgtacaaagaagagttaaaaagagttggagtgaggtttgagtgtgtggaagtatgttatttcattggaagagagctaa 2947823  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctcc 818  Q
    |||| ||||| ||||||||||||||||  || |  |||||||||| |||||||||||| |||||||||||||    
T  2947822 tgtctcgtgcggcttctttctctttaaccaggaaccatgttctttggatgcttaacttcatccaatatctcc 2947751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1042 - 1182
Target Start/End: Complemental strand, 2921286 - 2921146
Alignment:
Q  1042 gtggggttgcattttagaggtattcaatggtattcctgttattgatcataaattttatggggagaagattttctcttacaaagatgaactgaggcaaatc 1141  Q
    |||||| ||||||||  | ||||||||||   ||||||| ||||| |||||||||||||| ||||||||||||  ||||||||||||||||||| ||||     
T  2921286 gtggggatgcattttgtatgtattcaatgaccttcctgtgattgaccataaattttatggagagaagattttcgattacaaagatgaactgaggaaaata 2921187  T
Q  1142 ggggtggtggttgattttagaaatgctataaaaaagtttgc 1182  Q
    || | ||||||||||||| || ||||||| ||||| |||||    
T  2921186 ggtgcggtggttgattttggagatgctatcaaaaaatttgc 2921146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 647 - 850
Target Start/End: Complemental strand, 2921921 - 2921718
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||| ||||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||||||| |||||||  | ||||| ||||| ||||| |    
T  2921921 ttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgcaatttcatcggaaaggaactta 2921822  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| | |||  |||  | | ||||||| |  | ||||||| |||| ||||||||||| |||||||||||| | |||| |||| | ||| ||||||| ||    
T  2921821 tgtctcatgcatctttctccgctttaagcaagaatcatgttattttaatgcttaacttcatccaatatctcagtaaaagtcttcttcctctggacaaatt 2921722  T
Q  847 tgtg 850  Q
    ||||    
T  2921721 tgtg 2921718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1018 - 1170
Target Start/End: Complemental strand, 37796192 - 37796040
Alignment:
Q  1018 tgaatgtttcttgtatgatccagt-gtggggttgcattttagaggtattcaatggtattcctgttattgatcataaattttatggggagaagattttctc 1116  Q
    |||||||||||||||||| ||||  |||||| |||||||| || ||||||||||   ||||||| |||||||||||||| ||||| || || ||||||||    
T  37796192 tgaatgtttcttgtatga-ccagacgtggggctgcattttggatgtattcaatgcccttcctgtgattgatcataaattctatggagataatattttctc 37796094  T
Q  1117 ttacaaagatgaactgaggcaaatcggggtggtggttgattttagaaatgctat 1170  Q
    ||||||| |||||||||   ||||||| || || ||||||||| || |||||||    
T  37796093 ttacaaaaatgaactgaaaaaaatcggtgtagttgttgattttggagatgctat 37796040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 846 - 925
Target Start/End: Complemental strand, 2931030 - 2930955
Alignment:
Q  846 ttgtggtcttaagtcttctgtgggatcggtattaattgaatgattcaggatggcaagttgcatcacaaattagtgatatc 925  Q
    ||||||||||| | || ||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||    
T  2931030 ttgtggtcttaggcctcctgtgggatcggtatt----gaatgactcaggatggcaagttgcatcacaaattagtgatatc 2930955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 927 - 999
Target Start/End: Complemental strand, 2930831 - 2930760
Alignment:
Q  927 ccttaaaatttggcctcattgaccactgaggctgatgtttttgataatggaatgcataagacacttgaatgcc 999  Q
    |||| ||||||||| ||||||||| ||||||||| | |||| ||||||||||||||| |||||||||||||||    
T  2930831 ccttcaaatttggcttcattgaccgctgaggctgttctttt-gataatggaatgcatcagacacttgaatgcc 2930760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 880 - 924
Target Start/End: Complemental strand, 2947647 - 2947603
Alignment:
Q  880 attgaatgattcaggatggcaagttgcatcacaaattagtgatat 924  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  2947647 attgaatgattccggatggcaagttgcatcacaaattagtgatat 2947603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 596 - 644
Target Start/End: Complemental strand, 2932038 - 2931991
Alignment:
Q  596 gaacaaaacatttggatggtgcagcaaaccagttttttatgccagaaag 644  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  2932038 gaacaaaacatttagatg-tgcagcaaaccagttttttatgccagaaag 2931991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 849 - 924
Target Start/End: Original strand, 3011740 - 3011814
Alignment:
Q  849 tggtcttaagtcttctgtgggatcggtattaattgaatgattcaggatggcaagttg---catcacaaattagtgatat 924  Q
    |||||||| |||| ||||||||||||||||    ||||||||| |||||||||||||   |||||||||||||||||||    
T  3011740 tggtcttaggtctcctgtgggatcggtatt----gaatgattccggatggcaagttgtatcatcacaaattagtgatat 3011814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 880 - 925
Target Start/End: Complemental strand, 2921623 - 2921578
Alignment:
Q  880 attgaatgattcaggatggcaagttgcatcacaaattagtgatatc 925  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||||    
T  2921623 attgaatgattccggatggcaagttgcatcccaaattagtaatatc 2921578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 932 - 999
Target Start/End: Original strand, 3011944 - 3012010
Alignment:
Q  932 aaatttggcctcattgaccactgaggctgatgtttttgataatggaatgcataagacacttgaatgcc 999  Q
    |||||||||||| |||||  ||||||||| | |||| ||||||||| ||||| |||||||||||||||    
T  3011944 aaatttggcctctttgacagctgaggctgttctttt-gataatggagtgcatcagacacttgaatgcc 3012010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 5e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 1001 - 1220
Target Start/End: Original strand, 1506377 - 1506596
Alignment:
Q  1001 ggtttcaaaacacgagctgaatgtttcttgtatgatccagtgtggggttgcattttagaggtattcaatggtattcctgttattgatcataaattttatg 1100  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||| |||||||||    
T  1506377 ggtttcaaaacaccaggtgaatgtttcttgtatgatccagtgtggggctgcattttagaggtgttcgatggtcttcctgttattgatcatgaattttatg 1506476  T
Q  1101 gggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaa 1200  Q
    ||||||| ||||||  ||||||||||||| ||| |||| | |||||| ||||||||||||   |||| || |||||  ||| ||| ||||| |||| |||    
T  1506477 gggagaaaattttcagttacaaagatgaattgatgcaagtaggggtgctggttgattttaaggatgccatcaaaaaaattgaaaggctatttgaacaaaa 1506576  T
Q  1201 ggcattggaaacttcaatta 1220  Q
    ||||||||||| ||||||||    
T  1506577 ggcattggaaaattcaatta 1506596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 647 - 849
Target Start/End: Original strand, 1505813 - 1506015
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||| ||| |||||||||||||||||| ||| |||||||||| | | ||||| ||||||| || |||| |||||||||| ||||||| || ||||||||    
T  1505813 ttctacgggaatagaataaatgagtacacagaagagttgaaaatagtcggagttatgttcagttatgaggaagcatgtgacttcattgcaagagaactaa 1505912  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||  | ||||  ||| | ||||||||||| ||    
T  1505913 tgtctcgtgctgcttctttctctttaagaggaagtcatgttcttttgatgcttaacttcatccaatatcttaggaaaagccttcttcctttggacaactt 1506012  T
Q  847 tgt 849  Q
    |||    
T  1506013 tgt 1506015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 3e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 647 - 851
Target Start/End: Original strand, 4915561 - 4915765
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||| |||||||| ||||| ||||    
T  4915561 ttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaa 4915660  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||  ||||| |||||| |||||||||| |  |||||||||||||||||||||||||  |||||||||||| | |||| |||| | ||||| ||||| ||    
T  4915661 tgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgatgcttaactccatccaatatctcaggaaaagtcttcttcctttcgacaaatt 4915760  T
Q  847 tgtgg 851  Q
    |||||    
T  4915761 tgtgg 4915765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1001 - 1067
Target Start/End: Original strand, 4916125 - 4916191
Alignment:
Q  1001 ggtttcaaaacacgagctgaatgtttcttgtatgatccagtgtggggttgcattttagaggtattca 1067  Q
    ||||||||||| | |  |||||||||||||||||||||||||||||| |||||||| || |||||||    
T  4916125 ggtttcaaaacgccaagtgaatgtttcttgtatgatccagtgtggggctgcattttggaagtattca 4916191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 880 - 924
Target Start/End: Original strand, 4915830 - 4915874
Alignment:
Q  880 attgaatgattcaggatggcaagttgcatcacaaattagtgatat 924  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||    
T  4915830 attgaatggttcagaatggcaagttgcatcacagattagtgatat 4915874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 1001 - 1182
Target Start/End: Complemental strand, 28025204 - 28025023
Alignment:
Q  1001 ggtttcaaaacacgagctgaatgtttcttgtatgatccagtgtggggttgcattttagaggtattcaatggtattcctgttattgatcataaattttatg 1100  Q
    |||||||||| || |  |||||||||||||||||| |  |||||||| |||||||| || |||||||||||  ||||||| |||||||||||||| ||||    
T  28025204 ggtttcaaaataccaagtgaatgtttcttgtatgaccaggtgtggggctgcatttttgatgtattcaatggccttcctgtgattgatcataaattctatg 28025105  T
Q  1101 gggagaagattttctcttacaaagatgaactgaggcaaatcggggtggtggttgattttagaaatgctataaaaaagtttgc 1182  Q
    | || || ||||||||||||||| ||||||||| ||||||||| |||||||||||||||  | ||||||||||||| |||||    
T  28025104 gagataatattttctcttacaaaaatgaactgaagcaaatcggtgtggtggttgattttgaagatgctataaaaaaatttgc 28025023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 647 - 850
Target Start/End: Complemental strand, 28025768 - 28025565
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||||||||||||  ||||  |||| |||||||||||  | |||||||||| || ||||||| |||||||    |||||||||| |||||| |    
T  28025768 ttctatggggatagaataaacaagtatgaagaagagttgaaaactgtaggagtgatgtccagttgtgaggaagcatgcagtttcattggaagagaactga 28025669  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| |||||  ||||  |  || |||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| | || |||||||| ||    
T  28025668 tgtctcgtgcatcttccgttactctaagtaaaaatcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttctcccgttggacaaatt 28025569  T
Q  847 tgtg 850  Q
    ||||    
T  28025568 tgtg 28025565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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