View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_21 (Length: 597)
Name: NF18404_low_21
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 44583226 - 44583638
Alignment:
| Q |
18 |
gatttgaggttgattttgtttttaaagagcttcttcttgtgatagtattatttaaagaatacgttgggtttgnnnnnnnnnctttatggaacaaagactt |
117 |
Q |
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| T |
44583226 |
gatttgaggttgattttgtttttcaagagattcttcttgtgatagtattctttaaagaatatgttgggtttgaaaaaaaa-ctttatggaacaaagactt |
44583324 |
T |
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| Q |
118 |
gaagtcaagaggaggaacttttcctactcccaatatatttttgaatttacactttcatccaaaaatttatttgcaatgcttttaaaaagnnnnnnnnnct |
217 |
Q |
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| T |
44583325 |
gaagtcaagaggaggaacttttcctactcccaatatatttttgaatttatactttcatccaaaaatttatttgcaatgcttttaaaaagttttttttttt |
44583424 |
T |
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| Q |
218 |
t----cattaaaataagccgtttggaaaattatttttaaaaaagtgtggtttttagaaatatgaggtgnnnnnnngttgttccccaagtgatgattatga |
313 |
Q |
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| T |
44583425 |
tttttcattaaaataaaccgtttggaaaattatttttaaaaaagtgtggtttt-agaaatatgaggtgaaaaaaagttgttccccaagtgatgattatga |
44583523 |
T |
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| Q |
314 |
gagtagag----agattggatctagaccacaaagagagaagaggtgaaggtactcctacaagtattagtcgtgcgtataaggtaaaccattattttgttt |
409 |
Q |
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| T |
44583524 |
gagtagagagagagattggatctagtccacaaagagagaagaggtgaaggtactcctaaaagtattagtcgtgcgtataaggtaaaccattattttgttt |
44583623 |
T |
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| Q |
410 |
tcttataatttattt |
424 |
Q |
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| T |
44583624 |
tcttataatttattt |
44583638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 424 - 587
Target Start/End: Original strand, 44583697 - 44583874
Alignment:
| Q |
424 |
tcaatttagtccttaaaatctatctttcaataaaagaaatattatcaattaagttaaggaaatagtagaaaaagtggg----------------tgacct |
507 |
Q |
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| T |
44583697 |
tcaatttagtccttaaaaa--aactttcaataaaagaaatattatcgattaagttaaggaaatagtagaaaaagtgggtgggtgatcgactgggtgacct |
44583794 |
T |
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| Q |
508 |
ttgggcgatttgaaaggctaatttctgtctcaacattctctcaatggtcgtgtcttttctagtttttctaatgtcctatg |
587 |
Q |
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| T |
44583795 |
ttgggcgatttgaaaggctaatttctgtctcaacattctctcaatggtcgtgtcttttctagtttttctaatgtcctatg |
44583874 |
T |
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