View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_22 (Length: 595)
Name: NF18404_low_22
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 590
Target Start/End: Complemental strand, 52006091 - 52005511
Alignment:
| Q |
19 |
atttcaggatgtatttccctcctacacattattgaagttgttaacatagtagatgttttaggtaaatgaggagatgttatttgaattgtagtatgcgcgt |
118 |
Q |
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| T |
52006091 |
atttcaggatgtatttccctcctacacattattgaagttgtaaacatagtagatgttttaggcgcatgaggagaggttatttgaattgtagtatgcacgt |
52005992 |
T |
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| Q |
119 |
aggtttggttttaaaaaccatacgatcatgccaaaatcaattatagacattcgaaatcaattttgtctcttaat------------attttagaaccaaa |
206 |
Q |
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| T |
52005991 |
atgtttggttctaaaaaccatactatcatgcaaaaatcaattatagacatccgaaatcaattttgtctcttaaattgtctcttaaaattttagaaccaaa |
52005892 |
T |
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| Q |
207 |
catacacatatactacaatgcaaataacctctcctcatttgccttaaacatcttctatggaaatggcatctcctcattttaagagacaaaattgatttcg |
306 |
Q |
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| T |
52005891 |
catacacatatactacaatgcaaataacctctcctcatttgcctaaaacatcttctatggaaatggcatctcctcattttaagagaaaaaattgattttg |
52005792 |
T |
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| Q |
307 |
gatgtctataattgattttggcataatcgtatgattttgtttgacctccataaagaaaaattgtttgacgtaattttacataaacatcaagagtccgaac |
406 |
Q |
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| T |
52005791 |
aatgtctataattgattttggcataatcgtatgattttgttcgacctccataaagaaaaattgtttgacgtaattttacataaacatcaagagtccgaac |
52005692 |
T |
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| Q |
407 |
acaaattaatcaatttatattgatttcacnnnnnnnggtagctaattaaacaaaatgcctaccattgaaaacgcacactcataagtggaggaattgggat |
506 |
Q |
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| T |
52005691 |
acaaattaatcaatttatattgatttcactttttt---ttgatagctaaacaaaatgcctaccattgaaaacgcacactcataagtggaggaattggaat |
52005595 |
T |
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| Q |
507 |
ttgaacaccaatcaaagcgtttgacataacaattttaacgtttttgtcaatttagttaagatttgtggacatattcatctcact |
590 |
Q |
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| T |
52005594 |
ttgaaccccgatcaaagcatttgacataacaattttaacgtttttgtcaatttagttaagatttgtggacatattcatctcact |
52005511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 52005918 - 52005978
Alignment:
| Q |
284 |
tttaagagacaaaattgatttcggatgtctataattgattttggcataatcgtatgatttt |
344 |
Q |
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| T |
52005918 |
tttaagagacaaaattgatttcggatgtctataattgatttttgcatgatagtatggtttt |
52005978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 52005754 - 52005813
Alignment:
| Q |
132 |
aaaaccatacgatcatgccaaaatcaattatagacattcgaaatcaattttgtctcttaa |
191 |
Q |
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| T |
52005754 |
aaaatcatacgattatgccaaaatcaattatagacattcaaaatcaattttttctcttaa |
52005813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 52005833 - 52005904
Alignment:
| Q |
63 |
catagtagatgttttaggtaaatgaggagatgttatttgaattgtagtatgcgcgtaggtttggttttaaaa |
134 |
Q |
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| T |
52005833 |
catagaagatgttttaggcaaatgaggagaggttatttgcattgtagtatatgtgtatgtttggttctaaaa |
52005904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 52005976 - 52006047
Alignment:
| Q |
194 |
ttttagaaccaaacatacacatatactacaatgcaaataacctctcctcatttgccttaaacatcttctatg |
265 |
Q |
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| T |
52005976 |
ttttagaaccaaacatacgtgcatactacaattcaaataacctctcctcatgcgcctaaaacatctactatg |
52006047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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