View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_26 (Length: 572)

Name: NF18404_low_26
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_26
NF18404_low_26
[»] chr3 (3 HSPs)
chr3 (1-125)||(348547-348668)
chr3 (466-557)||(348396-348484)
chr3 (310-351)||(22433046-22433087)
[»] chr8 (2 HSPs)
chr8 (1-118)||(42125336-42125448)
chr8 (317-422)||(42125090-42125197)
[»] scaffold0047 (4 HSPs)
scaffold0047 (1-125)||(25235-25354)
scaffold0047 (317-383)||(25548-25614)
scaffold0047 (158-236)||(25388-25466)
scaffold0047 (466-518)||(30189-30241)
[»] scaffold0005 (4 HSPs)
scaffold0005 (1-125)||(11166-11285)
scaffold0005 (317-383)||(10906-10972)
scaffold0005 (158-236)||(11054-11132)
scaffold0005 (466-518)||(6292-6344)
[»] chr4 (4 HSPs)
chr4 (1-125)||(14828424-14828543)
chr4 (317-383)||(14828737-14828803)
chr4 (158-236)||(14828577-14828655)
chr4 (466-518)||(14833355-14833407)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 348668 - 348547
Alignment:
Q  1 acattgctgcatgacttgaatatgcaagatatgatcttagatcaacgtaaatgaaagtgtcaaatgaagaaaagagatggaaaatatatgtgtgtgtgtt 100  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||| |||| ||||||||||    
T  348668 acattgctgcagaacttgaatatgcaagatatgatcttaaatcaacgtaaatgaaagtgtcaaatgaagaaaagagat---aaaaatatatgtgtgtgtt 348572  T
Q  101 aagttgtggttataaaacgtcgtag 125  Q
    |||||||||||||||||||| ||||    
T  348571 aagttgtggttataaaacgttgtag 348547  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 466 - 557
Target Start/End: Complemental strand, 348484 - 348396
Alignment:
Q  466 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaacaatgaatgaatagaaagaaaaagaaatggaaataaatt 557  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  348484 gttttatcacacacaatgataggagtaacacattacgtatttatcaaag---acaatgaatgaatagaaagaaaaagaaatggaaataaatt 348396  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 22433087 - 22433046
Alignment:
Q  310 catcttgtcttgtaagtaattagagattgtttgaataatttt 351  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  22433087 catcttgtcttctaagtaattagagattgtttgaataatttt 22433046  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 42125448 - 42125336
Alignment:
Q  1 acattgctgcatgacttgaatatgcaagatatgatcttagatcaacgtaaatgaaagtgtcaaatgaagaaaagagatggaaaatatatgtgtgtgtgtt 100  Q
    ||||||||| |  |||||||||||| |||||| |||| ||||||  || ||||||| ||||||||||||||||||||| |||||||    ||||||||||    
T  42125448 acattgctgtactacttgaatatgctagatataatctcagatcagtgtgaatgaaactgtcaaatgaagaaaagagat-gaaaata----tgtgtgtgtt 42125354  T
Q  101 aagttgtggttataaaac 118  Q
    ||||||||||||||||||    
T  42125353 aagttgtggttataaaac 42125336  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 42125197 - 42125090
Alignment:
Q  317 tcttgtaagtaattagagattgtttgaataattttttggtgcatgcacagtcaattttataagttta----tagtagatcaagaaaaatgctcaactcgc 412  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||| |||||| |    |||||||||||| |||||||||||||| |    
T  42125197 tcttgtaagta-ttagagattgtttgaataattcttaggtgcatgcacaatcaattttttaagttcattattagtagatcaag-aaaatgctcaactcac 42125100  T
Q  413 ctaaactttt 422  Q
    ||||| ||||    
T  42125099 ctaaattttt 42125090  T

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Target: scaffold0047 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 25235 - 25354
Alignment:
Q  1 acattgctgcatgacttgaatatgcaagatatgatcttagatcaacgtaaatgaaagtgtcaaatgaagaaaagagatggaaaatatatgtgtgtgtgtt 100  Q
    |||||||||||  ||||||||||  |||||||||||||||||||| || |||||||||||||| || || |||||||| |||||||||    ||| ||||    
T  25235 acattgctgcacaacttgaatatataagatatgatcttagatcaatgtgaatgaaagtgtcaagtggaggaaagagat-gaaaatata----tgtctgtt 25329  T
Q  101 aagttgtggttataaaacgtcgtag 125  Q
    |||| ||||||||||||||| ||||    
T  25330 aagtagtggttataaaacgttgtag 25354  T

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Target: scaffold0047; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 25548 - 25614
Alignment:
Q  317 tcttgtaagtaattagagattgtttgaataattttttggtgcatgcacagtcaattttataagttta 383  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  25548 tcttataagtaattagagattgtttgaacaatttttaggtgcatgcacaatcaattttataagttta 25614  T

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Target: scaffold0047; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 25388 - 25466
Alignment:
Q  158 actatttaattttttgtgcataggttacatttgcaagaatattaaggaacatgtacattgatcacatcgtaagtaattg 236  Q
    |||||||| |||| |  |||||| ||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  25388 actatttatttttgtaagcatagtttaaatttgcaagaatattaagggacatgtacattgatcacattgtaagtaattg 25466  T

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Target: scaffold0047; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 30189 - 30241
Alignment:
Q  466 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaa 518  Q
    |||||||||||||||  |||| |||||||| |||||||| | |||||||||||    
T  30189 gttttatcacacacatcgataagagtaacatattacgtacccatcaaagacaa 30241  T

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Target: scaffold0005 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 11285 - 11166
Alignment:
Q  1 acattgctgcatgacttgaatatgcaagatatgatcttagatcaacgtaaatgaaagtgtcaaatgaagaaaagagatggaaaatatatgtgtgtgtgtt 100  Q
    |||||||||||  ||||||||||  |||||||||||||||||||| || |||||||||||||| || || |||||||| |||||||||    ||| ||||    
T  11285 acattgctgcacaacttgaatatataagatatgatcttagatcaatgtgaatgaaagtgtcaagtggaggaaagagat-gaaaatata----tgtctgtt 11191  T
Q  101 aagttgtggttataaaacgtcgtag 125  Q
    |||| ||||||||||||||| ||||    
T  11190 aagtagtggttataaaacgttgtag 11166  T

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Target: scaffold0005; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 10972 - 10906
Alignment:
Q  317 tcttgtaagtaattagagattgtttgaataattttttggtgcatgcacagtcaattttataagttta 383  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  10972 tcttataagtaattagagattgtttgaacaatttttaggtgcatgcacaatcaattttataagttta 10906  T

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Target: scaffold0005; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 11132 - 11054
Alignment:
Q  158 actatttaattttttgtgcataggttacatttgcaagaatattaaggaacatgtacattgatcacatcgtaagtaattg 236  Q
    |||||||| |||| |  |||||| ||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  11132 actatttatttttgtaagcatagtttaaatttgcaagaatattaagggacatgtacattgatcacattgtaagtaattg 11054  T

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Target: scaffold0005; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 518
Target Start/End: Complemental strand, 6344 - 6292
Alignment:
Q  466 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaa 518  Q
    |||||||||||||||  |||| |||||||| |||||||| | |||||||||||    
T  6344 gttttatcacacacatcgataagagtaacatattacgtacccatcaaagacaa 6292  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 14828424 - 14828543
Alignment:
Q  1 acattgctgcatgacttgaatatgcaagatatgatcttagatcaacgtaaatgaaagtgtcaaatgaagaaaagagatggaaaatatatgtgtgtgtgtt 100  Q
    |||||||||||  ||||||||||  |||||||||||||||||||| || |||||||||||||| || || |||||||| |||||||||    ||| ||||    
T  14828424 acattgctgcacaacttgaatatataagatatgatcttagatcaatgtgaatgaaagtgtcaagtggaggaaagagat-gaaaatata----tgtctgtt 14828518  T
Q  101 aagttgtggttataaaacgtcgtag 125  Q
    |||| ||||||||||||||| ||||    
T  14828519 aagtagtggttataaaacgttgtag 14828543  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 14828737 - 14828803
Alignment:
Q  317 tcttgtaagtaattagagattgtttgaataattttttggtgcatgcacagtcaattttataagttta 383  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  14828737 tcttataagtaattagagattgtttgaacaatttttaggtgcatgcacaatcaattttataagttta 14828803  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 14828577 - 14828655
Alignment:
Q  158 actatttaattttttgtgcataggttacatttgcaagaatattaaggaacatgtacattgatcacatcgtaagtaattg 236  Q
    |||||||| |||| |  |||||| ||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  14828577 actatttatttttgtaagcatagtttaaatttgcaagaatattaagggacatgtacattgatcacattgtaagtaattg 14828655  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 14833355 - 14833407
Alignment:
Q  466 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaa 518  Q
    |||||||||||||||  |||| |||||||| |||||||| | |||||||||||    
T  14833355 gttttatcacacacatcgataagagtaacatattacgtacccatcaaagacaa 14833407  T

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