View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_28 (Length: 565)
Name: NF18404_low_28
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 6 - 546
Target Start/End: Original strand, 55641478 - 55642019
Alignment:
| Q |
6 |
gtagataatactatagcaattaattgatctcttacttctgtacctagcttccaagatatgataagcatgcccaataaaatgatatctatgatttacttat |
105 |
Q |
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| T |
55641478 |
gtagataatactatagcaattaattgatctcttacttctgtacctagcttccaagatatgataagcatgcccaataaaatgatatctatgatttacttat |
55641577 |
T |
|
| Q |
106 |
tatttgaaacaattagtgtgcattaattgttttcacaatattcagcttataagcttgtgattcagtgattgagtnnnnnnngaaaaccttataagcttga |
205 |
Q |
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| T |
55641578 |
tatttgaaacaattagtgtgcatgaattgttttcacaatattcagcttataagcttgtgattcagtgattgagtaaaaaaagaaaaccttgtaagcttga |
55641677 |
T |
|
| Q |
206 |
ttatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgattcataagagtatgtaatgaaatgtatggacacaccatctaac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
55641678 |
ttatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgatt-ataagagtatgtaatgaaatgtatggacacaccagctaac |
55641776 |
T |
|
| Q |
306 |
agaatatggacata--gatagcaaccaaaccatgttgctgtcatgaggtttgatattttgtgtcgttgaatccttaagttatacggtatagctttttctg |
403 |
Q |
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| T |
55641777 |
agaatatggacatatagatagcaaccaaaccatgttgctgccatgaggtttgatattttgtgtcgttgaatccttaagctatatggtatagctttttctg |
55641876 |
T |
|
| Q |
404 |
gggttagagaattttcaaattctcctaacatttgcataaaagcatatatattaatgttgtatgaattttaaactacatgtgcatggaacatctttgggga |
503 |
Q |
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| T |
55641877 |
gggttagagaattttcaaattctcctaacatttgcataaaagcatatatattaatgttgtatgaattttaaactacatgtgcatggaacatctttgggga |
55641976 |
T |
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| Q |
504 |
gaaagcacaacagggtctatataaaatgttgcgataatgcctt |
546 |
Q |
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| T |
55641977 |
gaaagcacaacagggtctatataaaatgttgcgataatgcctt |
55642019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 6 - 518
Target Start/End: Original strand, 42661839 - 42662350
Alignment:
| Q |
6 |
gtagataatactatagcaattaattgatctcttacttctgtacctagcttccaagatatgataagcatgcccaataaaatgatatctatgatttacttat |
105 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42661839 |
gtagataatactatagtaattaattgatctcttacttctgtacctagcttccaagatatgataagcatgcccaataaaatgatatctatgatttacttat |
42661938 |
T |
|
| Q |
106 |
tatttgaaacaattagtgtgcattaattgttttcacaatattcagcttataagcttgtgattcagtgattgagtnnnnnnngaaaaccttataagcttga |
205 |
Q |
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| T |
42661939 |
tatttgaaacaatgagtgtgcattaattgttttcacaatattcagcttataagcttgtgattcagtgattgagtaaaaaaagaaaaccttataagcttga |
42662038 |
T |
|
| Q |
206 |
ttatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgattcataagagtatgtaatgaaatgtatggacacaccatctaac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||| |
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| T |
42662039 |
ttatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgatt-acaagagtatgtaatgaaatgtatggacccaccagctaac |
42662137 |
T |
|
| Q |
306 |
agaatatggacatagatagcaaccaaaccatgttgctgtcatgaggtttgatattttgtgtcgttgaatccttaagttatacggtatagctttttctggg |
405 |
Q |
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| T |
42662138 |
agaatatggacagagatagcaaccaaaccatgttgctgccatgaggtttgatattttgtgtcgttgaatccttaagctatatggtatagctttttctggg |
42662237 |
T |
|
| Q |
406 |
gttagagaattttcaaattctcctaacatttgcataaaagcatatatattaatgttgtatgaattttaaactacatgtgcatggaacatctttggggaga |
505 |
Q |
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| T |
42662238 |
gttagagaattttcaaattctcctaacatttgcataaaagaatatatattaatgttgtatgaattttaaactacatgtgcatggaacatctttggggaga |
42662337 |
T |
|
| Q |
506 |
aagcacaacaggg |
518 |
Q |
| |
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| T |
42662338 |
aagcacaccaggg |
42662350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 501
Target Start/End: Original strand, 31036099 - 31036139
Alignment:
| Q |
461 |
tgtatgaattttaaactacatgtgcatggaacatctttggg |
501 |
Q |
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| T |
31036099 |
tgtatgaattttaaactacatgtgcatagaacatctttggg |
31036139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 473
Target Start/End: Original strand, 31036010 - 31036075
Alignment:
| Q |
404 |
gggttagagaattttcaaattctcctaacatttgcataaaagcatatatattaatgttgtatgaatttta |
473 |
Q |
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|||||| ||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |
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| T |
31036010 |
gggttaaagaatcatcaaattctcctagcatttgcataaaag----tatattaatgttctatgaatttta |
31036075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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