View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_30 (Length: 542)
Name: NF18404_low_30
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 174 - 524
Target Start/End: Original strand, 9101641 - 9101989
Alignment:
| Q |
174 |
agattccttaaacaataccctcaaaatacttgttagcgagaccttttaaattgaagtaaaaataacagtgacaagaaagagggttataattgtgactatt |
273 |
Q |
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| T |
9101641 |
agattccttaagcaataccctcaaaatatttgttagcgagacctttcaaattgaagtaaaaataacagtgacaa--aagagggttataattgtgactatt |
9101738 |
T |
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| Q |
274 |
taaaaattggatcttgcactttgtaaaaatcttttctcaatttaaaacaatacacttaagtgtatgtgtagtttgatttgcatgtaccgagagtaaagag |
373 |
Q |
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| T |
9101739 |
taaaaattggatctttcactttgtaaaaaaaatttctcaatttaaaacaatacacttaactgtatgtgtagtttgatttgcatgtaccgagagtaaagag |
9101838 |
T |
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| Q |
374 |
tatagttgcagagttaacacacaagaactatcatggttatttagttgaagagtatagtcctcacaaccgtgagatttcactattgtatttagataacctt |
473 |
Q |
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| T |
9101839 |
tatagttgcagagttaacacacaagaactatcatggttatttagttgaagagtatagtcctcacaaccgtgagatttcactattgtatttagataacctt |
9101938 |
T |
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| Q |
474 |
ttccaatcttccctcacaccttatatcactctttttcttacaccttagttt |
524 |
Q |
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| T |
9101939 |
ttccaatcttccctcacaccttatatcactctttttcttacaccttagttt |
9101989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 9101478 - 9101591
Alignment:
| Q |
9 |
gattatactaggtgagattgatggaactcatgcgtcgttttcatgttaaaaagtatctttagggtatcatttaagcatccaagaatagtagtttttacgt |
108 |
Q |
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| T |
9101478 |
gattaaactaggtgagattgatggaacccatgcgtcgttttcatgttaaaaagtatctttagggtatcatttaagcatccaaaagtagtagtttttatat |
9101577 |
T |
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| Q |
109 |
tgaaaattatgtag |
122 |
Q |
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| T |
9101578 |
tggaaattatgtag |
9101591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 221 - 416
Target Start/End: Original strand, 9082623 - 9082810
Alignment:
| Q |
221 |
aaattgaagtaaaaataacagtgacaagaaagagggttataattgtgactatttaaaaattggatcttgcactttgtaaaaatcttttctcaatttaaaa |
320 |
Q |
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| T |
9082623 |
aaattaaagcaaaaataacagtcacaggaaagagggttacaattgtcactctttaaaaattggatcttgcactttgttaaaat-atttctcaatataaaa |
9082721 |
T |
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| Q |
321 |
caatacacttaagtgtatgtgtagtttgatttgcatgtaccgagagtaaagagtatagttgcagagttaacacacaagaactatcatggttattta |
416 |
Q |
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| T |
9082722 |
caatacgcttaggtgtatgtgtagtttgatttgca-------agagcaaagagtatacttgaagaaataacacacaaaaattatgatggttattta |
9082810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 227 - 366
Target Start/End: Complemental strand, 9111184 - 9111046
Alignment:
| Q |
227 |
aagtaaaaataacagtgacaagaaagagggttataattgtgactatttaaaaattggatcttgcactttgtaaaaatcttttctcaatttaaaacaatac |
326 |
Q |
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| T |
9111184 |
aagtgaaaataacggtcacatgaaagagggttataattgtgtcccttcaaaaattggatcttgcactttgtaaaaaaaaaat-tcaatttaaaacgatac |
9111086 |
T |
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| Q |
327 |
acttaagtgtatgtgtagtttgatttgcatgtaccgagag |
366 |
Q |
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| T |
9111085 |
atttaactgtatgtgtagtttgatttgcatgtaccgagag |
9111046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 468
Target Start/End: Original strand, 9083500 - 9083544
Alignment:
| Q |
424 |
agtatagtcctcacaaccgtgagatttcactattgtatttagata |
468 |
Q |
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| T |
9083500 |
agtatagtcttcgcaactgtgagatttcactatagtatttagata |
9083544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 13530522 - 13530592
Alignment:
| Q |
51 |
atgttaaaaagtatctttagggtatcatttaagcatccaagaatagtagtttttacgttgaaaattatgta |
121 |
Q |
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| T |
13530522 |
atgttaacaagtgtccttaaggtattgtttaagcatccaaaattagtagtttttactttgaaaattgtgta |
13530592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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