View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_31 (Length: 541)
Name: NF18404_low_31
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 232 - 526
Target Start/End: Complemental strand, 31612686 - 31612392
Alignment:
| Q |
232 |
aagggagggaattgaggaggctatgtatagttcgcgccatcttgggaagatgtttgctatgcctgagaggactgcgatgcctgttgagaagaagtagaag |
331 |
Q |
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| T |
31612686 |
aagggagggaattgaggaggctatgtatagttcgcgccatcttgggaagatgtttgctatgcctgagaggactgcgatgcctgttgagaagaagtagaag |
31612587 |
T |
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| Q |
332 |
gtagacatgcctgcgacaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgctgaaaccagtgagga |
431 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612586 |
gtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgctgaaaccagtgagga |
31612487 |
T |
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| Q |
432 |
agcggaggaagaagtaggagatgtaattgggggagaaggctgttaggatgccgaagatgctgtttagtatgcagactatcgtgagagatcctttt |
526 |
Q |
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| T |
31612486 |
agcggaggaagaagtaggagatgtaattgggggagaaggctgttaggatgctgaagatgctgtttaggatgcaaactatcgtgagagatcctttt |
31612392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 34419052 - 34419175
Alignment:
| Q |
317 |
gagaagaagtagaaggtagacatgcctgcgacaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgc |
416 |
Q |
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||||||||||||||||| ||||| ||||| | ||||| ||| ||||| | |||||| |||||||| ||||||||||| ||||| || || || |||| |
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| T |
34419052 |
gagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggcgcaaaggccaacaccgccagtgc |
34419151 |
T |
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| Q |
417 |
tgaaaccagtgaggaagcggagga |
440 |
Q |
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| T |
34419152 |
tgaaaccggtgaggaggcggagga |
34419175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 19266622 - 19266731
Alignment:
| Q |
37 |
ttatggttttgttagatacacgaatgttagggatgcagagaaattgttaaaagcagtgaataacattactatcggacagtttcatgtatgggcaaaattt |
136 |
Q |
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||||||||||| || || ||||||||||||||| ||| ||||| | || || ||||||||| || || |||| ||||||| ||| ||||||||| || |
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| T |
19266622 |
ttatggttttgccaggtattcgaatgttagggatgtagacaaatttcttaaggctgtgaataacgtttctttcggtcagtttcgtgtgtgggcaaaactt |
19266721 |
T |
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| Q |
137 |
gctcgctttg |
146 |
Q |
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| T |
19266722 |
gatcgctttg |
19266731 |
T |
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