View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_32 (Length: 539)
Name: NF18404_low_32
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Original strand, 39090591 - 39091115
Alignment:
| Q |
14 |
aggagcgtgtaggcgacatgtagatttggcgctggaactggaggtgaacgttgttcgtatgagaaggatcagctgcttgaattagaatctgtcattgcaa |
113 |
Q |
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| T |
39090591 |
aggagcgtgtaggcgacatgtagatttggcgctggaactggaggtgaacgttgttcgtatgagaaggatcagctgcttgaattagaatctgtcattgcaa |
39090690 |
T |
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| Q |
114 |
ggacagatgtgcaggccggaatgacagacaattgggcatgcatacatgattcttcctcagggttctcttttaaatcggcgtgtaagatgctgcaaaaagc |
213 |
Q |
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| T |
39090691 |
ggacagatgtgcaggccggaatgacagacaattgggcatgcatacatgattcttcctcagggttctcttttaaatcggcgtgtaagatgctgcaaaaagc |
39090790 |
T |
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| Q |
214 |
acttactattgttggctaggctttataagagcttatgcagaaacgagtgtagctaacttgcatcaacatggtgatatgtttcgagataaaaagttaaaga |
313 |
Q |
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| T |
39090791 |
acttactattgttggctaggctttataagagcttatgcagaaacgggtgtagctaacttgcatcaacatggtgatatgtttcgagataaaaagttaaaga |
39090890 |
T |
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| Q |
314 |
gaatcagacatctgatttggttgtctgttgtgtggtcactatggatagatggaaagattattgtacaagaaattgtattaattgataacacaaacaaaaa |
413 |
Q |
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| T |
39090891 |
gaatcagacatctgatttggttgtctgttgtgtggtcactatggatagatggaaagattattgtacaagaaattgtattaattgataacacaaacaaaaa |
39090990 |
T |
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| Q |
414 |
-------aca------aaactacacatttttagatgcattaattgatctcattcattgatttgagatcggtcgactcacactaccatcatcgatataaag |
500 |
Q |
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| T |
39090991 |
caaaactacataatccaaactacacatttttagatgcattaattgatctcattcattgatttgagatcggtcgactcacactaccatcatcgatataaag |
39091090 |
T |
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| Q |
501 |
actttattcatttgtacaatgttca |
525 |
Q |
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| T |
39091091 |
actttattcatttgtacaatgttca |
39091115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 39081229 - 39081430
Alignment:
| Q |
17 |
agcgtgtaggcgacatgtagatttggcgctggaactggaggtgaacgttgttcgtatg--agaaggatcagctgcttgaattagaatctgtcattgcaag |
114 |
Q |
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| T |
39081229 |
agcgcgtaggcaacatgtggatttggcactggaactggaggtgatcattgttcgtttgggagaaggatcagctgcttgaattagaatctgtcattgcagg |
39081328 |
T |
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| Q |
115 |
gacagatgtgcaggccgga-atgacagacaattgggcatg-------catacatgattcttcctcagggttctcttttaaatcggcgtgtaagatgctgc |
206 |
Q |
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| T |
39081329 |
gacggttatgcaggcaggatatg---gacaattgggaagggatacatcatacatgattctgctgcagggttctctgttaaatcgacgtataagctgctgc |
39081425 |
T |
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| Q |
207 |
aaaaa |
211 |
Q |
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||||| |
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| T |
39081426 |
aaaaa |
39081430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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