View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_33 (Length: 524)
Name: NF18404_low_33
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 2687641 - 2687148
Alignment:
| Q |
19 |
ccaagatcgttgcataatcgaatgatgagagaaacattgtagaccaaatcatcatatatttgtggaaaatcatctatctcatttgttaattcatatactg |
118 |
Q |
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| T |
2687641 |
ccaagatcattgcacaaccgaatgatgagagaaacattgtagaccaaatcatcatatatgtgcggaaaatcatctatctcgtttgttaattcatacactg |
2687542 |
T |
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| Q |
119 |
tgccaaaatatgaatgaagtagaattaatggccctgaagatgtaatccatgcattgttcaaatattcttgcaacgatggaatatatcctgttttgtacca |
218 |
Q |
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| T |
2687541 |
tgccaaaatatgaatgaagtagaattaatggccctgaagatgtaatccatgcattgttcaaatattcttgcaacgatggaatatatccggttttgtacca |
2687442 |
T |
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| Q |
219 |
ctttgcttccacatataatgctttgcaaaattcaatccactgtgaaaatatgagaataatcataagcaaataatgattcatatcttttaa-ggtttttac |
317 |
Q |
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| T |
2687441 |
ctttgcttccacatataatgctttgcaaaattcaatccactgtgaaaatgtgag---gatcataagcaaatattgattcatatctttcaatgatttttac |
2687345 |
T |
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| Q |
318 |
attttcaaaatataaattactgtttatgattaatatattattattagtaccgttttctttagataatgtaacacaaaattgaagttcttttctcctccaa |
417 |
Q |
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| T |
2687344 |
attttcaaaataaaaattactgtttatgattaatatattaacattagtaccgttttctttaggtaatgtaacacaaaattgaagttcttttctcctccaa |
2687245 |
T |
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| Q |
418 |
tatcataagcaatttcatttgtgacatcttgaagtgcattgaagcaaaacttcatgtaatctggaaggtcttcgatttctttggcgtcccatctgtg |
514 |
Q |
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| T |
2687244 |
tatcataagcaatttcatttgtgacatcttgaagtgcattgaagcaaaacttcatgtaatctggaaggtcttcgatttctttggcgtcccatctgtg |
2687148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 364 - 514
Target Start/End: Complemental strand, 2681833 - 2681684
Alignment:
| Q |
364 |
gtaccgttttctttagataatgtaacacaaaattgaagttcttttctcctccaatatcataagcaatttcatttgtgacatcttgaagtgcattgaagca |
463 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| || |||| ||||||| |||||||||||| |
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| T |
2681833 |
gtaccgttttctttaggtaatgtaacacaaaattgacgtttttttctccttcaatatcataagcaatttca-ttctgacttcttgaactgcattgaagca |
2681735 |
T |
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| Q |
464 |
aaacttcatgtaatctggaaggtcttcgatttctttggcgtcccatctgtg |
514 |
Q |
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| T |
2681734 |
aatcttcatgtactcaagaagttcttcattttctttggcatcccatctgtg |
2681684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 2682111 - 2682053
Alignment:
| Q |
19 |
ccaagatcgttgcataatcgaatgatgagagaaacattgtagaccaaatcatcatatat |
77 |
Q |
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| T |
2682111 |
ccaagatcattgcacaaccgaatgatgagagacacattgtagaccaaatcatcatatat |
2682053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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