View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_37 (Length: 504)
Name: NF18404_low_37
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 490
Target Start/End: Complemental strand, 27360558 - 27360067
Alignment:
| Q |
11 |
caaaggtgtggagtcttggaataccatgattgcaggctatttatgtcctaagtgactgctttgaactagccttgaatgagagtacaatggtgactctgct |
110 |
Q |
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| T |
27360558 |
caaaggtgtggagtcttggaataccatgattgcaggcaatgtatgtcctaagtgactgctttgaactagccttgaataagagtacaatggtgactctgct |
27360459 |
T |
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| Q |
111 |
tgtgctcacacagggttgcttgttggaaacaggattgttcttggattaa--------tgcttggtttgaatattcagctcagaaaataagtacgaacaga |
202 |
Q |
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| T |
27360458 |
tgtgctcacacagggttgcttgttggaaacaggattgttcttggattagataccacttgcttggtttgaatattcagctcagaaaataagtatgaacaga |
27360359 |
T |
|
| Q |
203 |
aacataataaga---tagtttgatcaaactttcaaagtgatagtagacccttgaatctcatgacatgcttcatgcaatggatattcgcctaagcaataac |
299 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27360358 |
aacataataagaagatagtttgatcaaactttcaaagtgatagtagacccttgaatctcatgacatgcttcatgcaatggatattcacctaagcaataac |
27360259 |
T |
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| Q |
300 |
cattactctaccaatttgatagtagagcattgtgttcataaaatgaa-attctgttgattccattgcttgtatcgctaggtgttagcggtcctgttttgt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27360258 |
cattactctaccaatttgatagtagagcattgtgttcataaaatgaatgttctgttgattccattgcttgtatcgctaggtgttagcggtcctcttttgt |
27360159 |
T |
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| Q |
399 |
agcgagttgagtggatttgccttttctcttcttctgtgttgtatccattgtacaccttgtttaatataa-tagttgtttctgctggttataaa |
490 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27360158 |
agcgagttgagtggatttgcc-tttctcttcttctgtgttgtatccattgtacaccttgtttaatataattagttgtttctgctggttataaa |
27360067 |
T |
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