View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_38 (Length: 488)
Name: NF18404_low_38
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 23 - 479
Target Start/End: Original strand, 31644965 - 31645421
Alignment:
| Q |
23 |
tgtgtatgtgatacatgtcagatactgacacttgtacgacacgtgtcaaacacctcaagtgtctaaaaacaattcttcatcttaacacacatctgacact |
122 |
Q |
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| T |
31644965 |
tgtgtgtgtgatacatgtcagatactgacatttgtacgacatgtgtcaaacacctcaagtgtctaaaaacaattcttcatcttaacacacatctgacact |
31645064 |
T |
|
| Q |
123 |
cattgaacacaactatgtactattttaattagtggacaactgataagttctcacatgtatgctcatcttccagcatacacagatcttcttctttctttcc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31645065 |
cattgaacacaactatgtactattttaattagtggacaactgataagttctcacatgtatgctcatcttccagcatacacagatcttcttctttctttcc |
31645164 |
T |
|
| Q |
223 |
tggtttccctttccaatctcctatttcatctattatgttctttgtcttcattaagtcttgttggtcatcttgattcacaatttagatatttatccatgat |
322 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31645165 |
tggtttcccttttcaatctcctatttcatctattatgttctttgtcttcattaagtcttgttggtcatcttgattcacaatttagatatttatccacgat |
31645264 |
T |
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| Q |
323 |
tctcatatttaatcttcttaattaatatatttggacatcaacattgtccaattgttggtattcgtgttgtatttggtatccctgtcatgtatgtgtaagt |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
31645265 |
tctcatatttaatcttcttaattaatatatttggacatcaacattgtccaattgttggtgttcgtgttgtatttggtgtccctgtcatgtatgtgtaagt |
31645364 |
T |
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| Q |
423 |
gctttctaaaatattaatcattcaagcattcctaaggcctataacctttatctgtgc |
479 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31645365 |
gctttctaaaaaattaatcattcaagcattcctaaggcctataacctttatctgtgc |
31645421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 54173616 - 54173689
Alignment:
| Q |
240 |
ctcctatttcatctattatgttctttgtcttcattaagtcttgttggtcatcttgattcacaatttagatattt |
313 |
Q |
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|||||||||||| | ||||| |||| |||||||| |||||| |||||||| |||||| |||||||||||||| |
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| T |
54173616 |
ctcctatttcatttgttatggtcttcatcttcattctgtcttggtggtcatcatgattctcaatttagatattt |
54173689 |
T |
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