View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_40 (Length: 485)
Name: NF18404_low_40
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 39128584 - 39129070
Alignment:
| Q |
1 |
aatagtatcactgtgtttatgtttcattttgtttgaaatttccttaacaaggtttcatttttgtgtggtccgagtgaatgccatagttgagaaattgatt |
100 |
Q |
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| T |
39128584 |
aatagtatcactgtgtttatgtttgattttgtttgaaatttccttaacaaggtttcatttttgtgtggtctgagtgaatgccatagttgagaaattgatt |
39128683 |
T |
|
| Q |
101 |
ttaagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattgttact----actaggtgtttatgtttattcttattt |
196 |
Q |
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| T |
39128684 |
ttaagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattgttacttactaccaggtgtttatgtttattcttattt |
39128783 |
T |
|
| Q |
197 |
tcttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcacttaactttgtttttcctgattagatttttaaatgtctattttct |
296 |
Q |
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| T |
39128784 |
tcttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcacttacctttgtttttcctgattagatttttaaatgtctattttct |
39128883 |
T |
|
| Q |
297 |
tggtgtttattgtttgtgtttgcttttggaagtgtattgtagaagtttcttgaaggaagcttatttattgnnnnnnnnnnnnnnnncacaggcttttctt |
396 |
Q |
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| T |
39128884 |
tggtgtttatcgtttgtgtttgcttttggaagtgtattgtagaagtttcttgaaggaagcttatttattgttttttggttttttttcacaggcttttctt |
39128983 |
T |
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| Q |
397 |
tggtgtgaaggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtgatggtgatgatgtccat |
483 |
Q |
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| T |
39128984 |
tggtgtgaaggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtggtggtgatgatggccat |
39129070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 39496094 - 39496028
Alignment:
| Q |
405 |
aggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtgatggt |
471 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||| |
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| T |
39496094 |
aggctaccgttgaaaaatggcttttaagggttctgataagtcaaagttctgtggtgttggtggtggt |
39496028 |
T |
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