View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_45 (Length: 447)
Name: NF18404_low_45
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_45 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 51932671 - 51933107
Alignment:
| Q |
11 |
caaaggactaatgtctttgaacacagtttcatcccattcctcagccttcatatctttgataggacgaatgtaattatcatcttgccacactattggctta |
110 |
Q |
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| T |
51932671 |
caaaggactaatgtctttgaacacagtttcatcccattcctcagccttcatatctttgataggacgaatgtaattatcatcttgccacactattggctta |
51932770 |
T |
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| Q |
111 |
tcatcatcaacatcatcgtcctcggcatcatcattatcttccttctttttattttggatggtaatcttgtcgaaaaactgcccaaggctaaatccccagc |
210 |
Q |
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| T |
51932771 |
tcatcatcaacatcatcgtcctcggcatcatcattatcttccttctttttattttggatggtaatcttgtcgaaaaactgcccaaggctaaatccccagc |
51932870 |
T |
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| Q |
211 |
catcagcatcttgaggccaattaggatcctcttcttccacaacaagttggtaatcattaattagcttttgcattttcttcttcttttcctcggtgtctac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51932871 |
catcagcatcttgaggccaattaggatcctcttcttccacaacaagttggtaatcattaattagcttttgcattttcttcttcttttcctcggtgtctac |
51932970 |
T |
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| Q |
311 |
aacctcttgaacttgaggtttcttatccataacctgtctaatttttcttctccattcttgtctctcttcaagagtcataacataagggtcattttctttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51932971 |
aacctcttgaacttgaggtttcttatccataacctgtctaatttttcttctccattcttgtctctcttcaagagtcataacataagggtcattttctttt |
51933070 |
T |
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| Q |
411 |
ggtgtgtcatcttcatagtcgctatcatcactgtcac |
447 |
Q |
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| T |
51933071 |
ggtgtgtcatcttcatagtcgctatcatcactgtcac |
51933107 |
T |
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