View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_49 (Length: 442)
Name: NF18404_low_49
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 44054383 - 44053953
Alignment:
| Q |
15 |
atatcaccattgacagcaggactcactgattggagtgagtgtcctgaaatgggtgcaattggtgacttattagcagcttcagattttgcagcaagtgctt |
114 |
Q |
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| T |
44054383 |
atatcaccattgacagcaggactcactgattggagtgagtgtcctgaaatgggtgcaattggtgacttattagcagcttcagattttgcagcaagtgctt |
44054284 |
T |
|
| Q |
115 |
cagttttggtagttcaacaacatgttgggataggatcaaatggtgatggattagaaacaccaaatggtggtgatgaatataataatagtagtgatacaga |
214 |
Q |
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| T |
44054283 |
cagttttggtagttcaacaacatgttgggataggatcaaatggtgatggattagaaacaccaaatggtggtgaagaatataataatagtagtgacacaga |
44054184 |
T |
|
| Q |
215 |
tcacaattctacatcatcaaggggacacactgttttttatacagaacgaactagtcctcatactttata-----------acctttctttttctttttcc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44054183 |
tcacaattctacatcatcaaggggacacactgttttttatacagaacgaactagtcctcatactttataacaaaatatagacctttctttttctttttcc |
44054084 |
T |
|
| Q |
304 |
ttctaatgcatcatagatttttgtatcatgcctcctggtgcagttacttttttgcatgtaagttgtaagttgttataagaaatgtacatacatacagttg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44054083 |
ttctaatgcatcatagatttttgtatcatgcctcctggtgcagttacttttttgcatgtaagttgtaagttgttataagaaatgtacatacatacagttg |
44053984 |
T |
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| Q |
404 |
catacttgtatgtctcttgcttatgatgatg |
434 |
Q |
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| T |
44053983 |
catacttgtatctctcttgcttattatgatg |
44053953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 39236246 - 39236119
Alignment:
| Q |
15 |
atatcaccattgacagcaggactcactgattggagtgagtgtcctgaaatgggtgcaattggtgacttattagcagcttcagattttgcagcaagtgctt |
114 |
Q |
| |
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|||||||| |||| ||||| || ||||| |||||||||||||||||| | || ||||||||||| || |||||| | || ||||||||| ||| ||||| |
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| T |
39236246 |
atatcaccgctgacggcagggctaactgactggagtgagtgtcctgaattaggagcaattggtgatttgttagcatcatctgattttgcaacaattgctt |
39236147 |
T |
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| Q |
115 |
cagttttggtagttcaacaacatgttgg |
142 |
Q |
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|||| ||||||||||||||| ||||||| |
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| T |
39236146 |
cagtgttggtagttcaacaatatgttgg |
39236119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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