View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_52 (Length: 431)
Name: NF18404_low_52
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 417
Target Start/End: Original strand, 29141584 - 29141992
Alignment:
| Q |
9 |
tcccacctattggactagtcctaacaatcttagttgttgtctaaaaagggctgtgtttgagttatagtcattctgtttcggaattggaagggagatgcgg |
108 |
Q |
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| T |
29141584 |
tcccacctattggactagtcctaacaatcttagttgttgtctaaaaagggctgtgtttgagttatagtcattctgtttcggaattggaagggagatgcgg |
29141683 |
T |
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| Q |
109 |
ttggactatagtgnnnnnnnacgctgggggagcttagatgtattggatttgaaagactgcgagaaaaaagactagatatatgtactttgtgacaattagg |
208 |
Q |
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| T |
29141684 |
ttggactatagcgtttttttacgctgggggaacttagatgtattggatttgaaagactgcgagaaaaaagattagatatatgtactttgtgacaattagg |
29141783 |
T |
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| Q |
209 |
tacttttcacttcaagttctcatcattgttgtgttacaacattatcattttgtaacatgcacttgtgatttttatgcagatcgattaaattttgttaatg |
308 |
Q |
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| T |
29141784 |
tacttttcatttcaatttctcatcattgttgtgttacaacagtatcattttgtaacatgcacttgtgatttttatgcagattgattaaattttgttaatg |
29141883 |
T |
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| Q |
309 |
cataggggtagctttattttgtacgtttggagaaagtcacatttgattcatagcttttacttaccgacacaaaatgagttcgtttggtgtaactttaaag |
408 |
Q |
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| T |
29141884 |
cataggggtagctttattttgtacgtttagagaaagtcacatttgattcatagcttttacttaccgacacaaaatgagttcatttggtgtaactttaaag |
29141983 |
T |
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| Q |
409 |
agaaatgtt |
417 |
Q |
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| T |
29141984 |
agaaatgtt |
29141992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 29014189 - 29014315
Alignment:
| Q |
141 |
cttagatgtattggatttgaaagactgcgagaaaaaagactagatatatgtactttgtgacaatt--aggtacttttcacttcaagttctcatcattgtt |
238 |
Q |
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| T |
29014189 |
cttagatgta--ggattttgaagaatgcgagaaaacagaccagatatatgtacttcgtgacaaattaaggtacttttgacttcaatttctcatcattgtt |
29014286 |
T |
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| Q |
239 |
gtgttacaacattatcattttgtaacatg |
267 |
Q |
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| T |
29014287 |
ctgttacaactgtatcattttgtaacatg |
29014315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 286 - 383
Target Start/End: Original strand, 34254650 - 34254747
Alignment:
| Q |
286 |
agatcgattaaattttgttaatgcataggggtagctttattttgtacgtttggagaaagtcacatttgattcatagcttttacttaccgacacaaaat |
383 |
Q |
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| T |
34254650 |
agattgattgaattttcttaatgctcaagggtagctttgttttgtatgtttggagaaagtcacatttgatacgtagcttttacttaccgacacaaaat |
34254747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 29014420 - 29014476
Alignment:
| Q |
358 |
atagcttttacttaccgacacaaaatgagttcgtttggtgtaactttaaagagaaat |
414 |
Q |
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| T |
29014420 |
atagcttttacttaccgacactagatgagttagttcagtgtaactttaaagtgaaat |
29014476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 37896888 - 37896930
Alignment:
| Q |
375 |
acacaaaatgagttcgtttggtgtaactttaaagagaaatgtt |
417 |
Q |
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| T |
37896888 |
acacaaaatgagttagtttggtgtaactttaaactgaaatgtt |
37896930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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