View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_53 (Length: 430)
Name: NF18404_low_53
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_53 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 19197687 - 19198113
Alignment:
| Q |
1 |
atttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgtttttgaactttgaaaaagttatgaataagacacaaattt |
100 |
Q |
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| T |
19197687 |
atttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgttttttaactttgaaaaagttatgaataaggcacaaattt |
19197786 |
T |
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| Q |
101 |
aacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataaagag |
200 |
Q |
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| T |
19197787 |
aacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataaagag |
19197886 |
T |
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| Q |
201 |
tgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagacttctcataccagc |
300 |
Q |
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| T |
19197887 |
tgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagacttctcatac---c |
19197983 |
T |
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| Q |
301 |
tgacaatgtttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgttttctttgttaga |
400 |
Q |
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| T |
19197984 |
tgacaatatttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgttttctttgttaga |
19198083 |
T |
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| Q |
401 |
aattcaatgtaatcctgcttccaagtacct |
430 |
Q |
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| T |
19198084 |
aattcaatgtaatcctgcttccaagtacct |
19198113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 5 - 430
Target Start/End: Original strand, 19201671 - 19202097
Alignment:
| Q |
5 |
cagacttattgttcatactagactgctaattgttttacagatagca---tctactc--atgtttttgaactttgaaaaagttatgaataagacacaaatt |
99 |
Q |
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| T |
19201671 |
cagacttattgttcatactagacagctaattgttttgcacatagcaccatctactctcatgtttt-gaactgtgaaaaagttatgaataagacacaaatt |
19201769 |
T |
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| Q |
100 |
taacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataaaga |
199 |
Q |
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| T |
19201770 |
taacaagacctagaacattatctgattttacctaaggaagcatttcatgacatgcttaaagaaagattaaatgcataagatctattaaacctaataaaga |
19201869 |
T |
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| Q |
200 |
gtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagacttctcataccag |
299 |
Q |
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| T |
19201870 |
gtgtctgagaaaaacctcttgcttcattagcttgcgttttgctttcatcctcttcttgtcttcccaggaatctatcaacactttcaacttctcatac--- |
19201966 |
T |
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| Q |
300 |
ctgacaatgtttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgttttctttgttag |
399 |
Q |
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|||| |||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||| |
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| T |
19201967 |
ctgagaatgtttttcattaatatataaactgaacgtaatgcttgattcaagagatgatattatttattctagttctgtttgagactgttttctttgttac |
19202066 |
T |
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| Q |
400 |
aaattcaatgtaatcctgcttccaagtacct |
430 |
Q |
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| T |
19202067 |
agattcaatgtaatcctacttccaagtacct |
19202097 |
T |
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