View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_54 (Length: 430)
Name: NF18404_low_54
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 412
Target Start/End: Complemental strand, 13308203 - 13307817
Alignment:
| Q |
11 |
cagagaaggggttttgtgttgcaaggagttttggtatggagttggccatggtattatgttgtgtatgatgcacatagcaaagggattagtccatctatat |
110 |
Q |
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| T |
13308203 |
cagagaaggggttttgtgttgcaaggagttttggtatggagttggccatggtattatgttgtgtatgatgcatatagcaaagggattagtccatctatat |
13308104 |
T |
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| Q |
111 |
ataggcttttgtatttcgannnnnnnaaggatgttttcgaaaaataattaccaatattgatatgttacnnnnnnnaatgccaaaaaattacattgtttga |
210 |
Q |
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| T |
13308103 |
ataggcttttgtatttcgatttttttaaggatgttttcgaaaaataattaccaatat------------------aatgccaaaaaattacattgtttga |
13308022 |
T |
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| Q |
211 |
actttgcaaca---aggtaatttttaacagataaataaaggatgatatttacaatgaaatacagctaatttgagtgataaattatgagtagcatggacta |
307 |
Q |
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| T |
13308021 |
actttgcaacattaaggtaatttttaacagataaataaaggatgatatttacaatgaagtacagctaatttgagtgataaattatgagtagcatggacca |
13307922 |
T |
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| Q |
308 |
agtaaacaaaatgttcatagattttatcaactaataaaatgaactaaaagtttaaagcacaattagttcatttagatatagacctaaggctatatgacat |
407 |
Q |
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| T |
13307921 |
agtaaacaaaatgttcatagattttatcaactaataaaatgaactaaaagtttaaagcacaattagttcatttagatatagacctaaggctatatgacat |
13307822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 13333368 - 13333258
Alignment:
| Q |
11 |
cagagaaggggttttgtgttgcaaggagttttggtatggagttggccatggtatta-tgttgtgtatgatgcacatagcaaagggattagtccatctata |
109 |
Q |
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| T |
13333368 |
cagagaaggggttttgtgtcacaaggagctttgggtttgagttggccattgtagtagtgttgtgaatgatgcaaagagcaaaggggttaatccatctata |
13333269 |
T |
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| Q |
110 |
tataggctttt |
120 |
Q |
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| T |
13333268 |
tataggctttt |
13333258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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