View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_57 (Length: 423)
Name: NF18404_low_57
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 183 - 408
Target Start/End: Complemental strand, 37264798 - 37264572
Alignment:
| Q |
183 |
agtagtcgtagaaaaagggttgatgatgtacatacattttatagtaataatccgaagtgtgaggaaagccgatggttatttgaaattccaaaaatatttt |
282 |
Q |
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| T |
37264798 |
agtagtcgtaggaaaaaggttgatgatgtacatacattttatagtaataatccgaagtgtgaggaaagccgatggttatttgaaattccaaaaatatttt |
37264699 |
T |
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| Q |
283 |
ataaccttgtgatctcaataacatgaagataatatgataatagaac-tacaaatgaaaggttaaaaccaaagtgtaatttctttaatagatataagagtt |
381 |
Q |
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| T |
37264698 |
attaccttgtgatctcaataacatgaagataatatgataatggaacatacacatgaaaggttaaaaccaaagtgtaatttctttaatagatataagagtt |
37264599 |
T |
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| Q |
382 |
aaatacataactttttaataaataatt |
408 |
Q |
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| T |
37264598 |
aaatacataactttttaataaataatt |
37264572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 37264427 - 37264303
Alignment:
| Q |
255 |
tggttatttgaaattccaaaaatattttataaccttgtgatctcaataacatgaagataatatgataatagaactacaaatgaaaggttaaaaccaaagt |
354 |
Q |
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|||| |||||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||| | | |||||| |||||||||||| | |
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| T |
37264427 |
tggtcatttgaaattacaaaaatattttagaaccatgtgatttcaataacatgaagataatatgataatggaac-aaacatgaaatgttaaaaccaaaat |
37264329 |
T |
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| Q |
355 |
gtaatttctttaatagatataagagt |
380 |
Q |
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| T |
37264328 |
gtaatttttttaatagatagaagagt |
37264303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 37264966 - 37264898
Alignment:
| Q |
14 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccat |
82 |
Q |
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| T |
37264966 |
agcataggcgagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccat |
37264898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 37261193 - 37261132
Alignment:
| Q |
14 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaat |
75 |
Q |
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| T |
37261193 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaat |
37261132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 37276916 - 37276848
Alignment:
| Q |
14 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccat |
82 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||| |||||||| |||| ||||||||||||||| |
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| T |
37276916 |
agcataggcaaggccaatcatggctaacattacaagggctagaataacaacatgccttgaatgtgccat |
37276848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 37280765 - 37280697
Alignment:
| Q |
14 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccat |
82 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||| |
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| T |
37280765 |
agcataggtaaggccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccat |
37280697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 23936455 - 23936483
Alignment:
| Q |
380 |
ttaaatacataactttttaataaataatt |
408 |
Q |
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| T |
23936455 |
ttaaatacataactttttaataaataatt |
23936483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 412
Target Start/End: Original strand, 42480001 - 42480033
Alignment:
| Q |
380 |
ttaaatacataactttttaataaataattgatg |
412 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
42480001 |
ttaaatatataactttttaataaataattgatg |
42480033 |
T |
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