View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_58 (Length: 421)

Name: NF18404_low_58
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_58
NF18404_low_58
[»] chr2 (17 HSPs)
chr2 (19-411)||(28214369-28214761)
chr2 (19-411)||(28221523-28221915)
chr2 (136-407)||(32310190-32310463)
chr2 (136-407)||(32564357-32564630)
chr2 (136-411)||(32786808-32787085)
chr2 (136-407)||(32814020-32814298)
chr2 (136-407)||(32306057-32306330)
chr2 (247-363)||(32316568-32316684)
chr2 (247-401)||(28174552-28174704)
chr2 (19-77)||(32305961-32306019)
chr2 (19-77)||(32814336-32814394)
chr2 (321-401)||(28171417-28171497)
chr2 (19-71)||(32787130-32787182)
chr2 (353-411)||(32317376-32317434)
chr2 (19-63)||(32310094-32310138)
chr2 (19-63)||(32564682-32564726)
chr2 (351-401)||(28183044-28183094)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 28214761 - 28214369
Alignment:
Q  19 aaacagtcagcctcctaggtaaattactttacacttatgcatttatgattatattatgaaaaaggtttgtatcttggccgcattgcaatcatgttattgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28214761 aaacagtcagcctcctaggtaaattactttacacttatgcatttatgattatattatgaaaaaggtttgtatcttggccgcattgcaatcatgttattgc 28214662  T
Q  119 gaactgttgacagttgacctgatgcaacctcaagtgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacacnnnnnnnaaaa 218  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||    
T  28214661 gaactgttgacagttgacctgatgcgacctcaactgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattacgatcacactttttataaaa 28214562  T
Q  219 ccttgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28214561 ccttgaatatgactaatgagatctgttggtttcttgataatctaaaggagaacacaacattggaaaaatcggttgcgatttcattcagcaaaggctgtac 28214462  T
Q  319 gactttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 411  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28214461 gactttcaaggaacagggcaaccagacccgagtatacctctcgatttccttagtcagatgaggcaaaactgtcctgacaacaataagaataat 28214369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 28221523 - 28221915
Alignment:
Q  19 aaacagtcagcctcctaggtaaattactttacacttatgcatttatgattatattatgaaaaaggtttgtatcttggccgcattgcaatcatgttattgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  28221523 aaacagtcagcctcctaggtaaattactttacacttatgcatttatgattataatatgaaaaaggtttgtatcttggccgcattgcaatcctgttattgc 28221622  T
Q  119 gaactgttgacagttgacctgatgcaacctcaagtgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacacnnnnnnnaaaa 218  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  28221623 gaactgttgacagttgacctgatgcgacctcaactgtggccacagagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacactttttataaaa 28221722  T
Q  219 ccttgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  28221723 ccttgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatctgttgcgatttcattcagcaaaggctctac 28221822  T
Q  319 gactttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 411  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28221823 gactttcaaggaacagggcaaccagacccgagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 28221915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 136 - 407
Target Start/End: Original strand, 32310190 - 32310463
Alignment:
Q  136 cctgatgcaacctcaagtgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgat--cacacnnnnnnnaaaaccttgaatatgacta 233  Q
    ||||||||| |||||| ||||||||||||||| | ||||||| |||||||| |||||| |||| |||  |||||       ||||||||||||| | |||    
T  32310190 cctgatgcagcctcaactgtggtcacaaagacatgaaaaaccttgatgtcgtagctgagattgtgatatcacacattttttaaaaccttgaataaggcta 32310289  T
Q  234 atgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaaca 333  Q
    |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32310290 atgagatctgttggtttcttgataatctaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggctgtacgactttcaaggaaca 32310389  T
Q  334 gggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa 407  Q
    ||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  32310390 gggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa 32310463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 136 - 407
Target Start/End: Complemental strand, 32564630 - 32564357
Alignment:
Q  136 cctgatgcaacctcaagtgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgat--cacacnnnnnnnaaaaccttgaatatgacta 233  Q
    ||||||||| |||||| ||||||||||||||| | ||||||| |||||||| |||||| |||| |||  |||||       ||||||||||||| | |||    
T  32564630 cctgatgcagcctcaactgtggtcacaaagacatgaaaaaccttgatgtcgtagctgagattgtgatatcacacattttttaaaaccttgaataaggcta 32564531  T
Q  234 atgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaaca 333  Q
    |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  32564530 atgagatctgttggtttcttgataatctaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggttgtacgactttcaaggaaca 32564431  T
Q  334 gggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa 407  Q
    ||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  32564430 gggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa 32564357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 136 - 411
Target Start/End: Complemental strand, 32787085 - 32786808
Alignment:
Q  136 cctgatgcaacctcaagtgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacacnnnnnnn--aaaaccttgaatatgacta 233  Q
    |||||| || |||||| ||||||||||||||| ||||||||| |||||||| |||||| |||| |||| |||         ||||||||||||| | |||    
T  32787085 cctgatccagcctcaactgtggtcacaaagacatcaaaaaccctgatgtcgtagctgagattgtgatcccacatattttttaaaaccttgaataaggcta 32786986  T
Q  234 atgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaaca 333  Q
    ||||||||||||||||||||||||| ||  ||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  32786985 atgagatctgttggtttcttgataaactacaggaggacacaacattggaaaaatcggttgcgatttctttcagcaaaggctgtacgactttcaaggaaca 32786886  T
Q  334 gggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 411  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  32786885 gggcaaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaataat 32786808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 136 - 407
Target Start/End: Complemental strand, 32814298 - 32814020
Alignment:
Q  136 cctgatgcaacctcaagtgtggtcacaaagacttcaaaaaccatgatgtcgcagc-----tgaaattgcgatc--acacnnnnnnnaaaaccttgaatat 228  Q
    ||||||||| |||||| ||||||||||||||| ||||||||| |||||||| | |     ||| |||| ||||  ||||       ||||||||| |||     
T  32814298 cctgatgcagcctcaactgtggtcacaaagacatcaaaaaccctgatgtcgtatcgtaattgagattgtgatctcacacattttttaaaaccttgtataa 32814199  T
Q  229 gactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaag 328  Q
    | ||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  32814198 ggctaatgagatctgttggtttcttgataatttaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggttgtacgactttcaag 32814099  T
Q  329 gaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa 407  Q
    |||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  32814098 gaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa 32814020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 136 - 407
Target Start/End: Original strand, 32306057 - 32306330
Alignment:
Q  136 cctgatgcaacctcaagtgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacacnnnnnnna--aaaccttgaatatgacta 233  Q
    ||||||||| |||||| ||||||| ||||||| ||||||||| |||||||| |||||| |||| |||| |||          |||||||||||| |  ||    
T  32306057 cctgatgcagcctcaattgtggtcgcaaagacatcaaaaaccctgatgtcgtagctgagattgtgatctcacgtaatttttcaaaccttgaatagggtta 32306156  T
Q  234 atgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaaca 333  Q
    ||||||||||||||||||| |||||| |  ||| | ||||||| |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  32306157 atgagatctgttggtttctggataatatacaggaggacacaaccttggaaaaatcggttgtgatttcattcagcaaaggttgtacgactttcaaggaaca 32306256  T
Q  334 gggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa 407  Q
    |||||||||||||| |||||||||||||||||  |||||| |||||| | ||||||||||||| ||| ||||||    
T  32306257 gggcaaccagacccgagtatacctctcgattttttcagtctgatgagactaaactgtcctgactacagtaagaa 32306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 32316568 - 32316684
Alignment:
Q  247 gtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacc 346  Q
    ||||||||||||| | |||| | ||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||||||| | |||| ||||     
T  32316568 gtttcttgataatataaaggaggacacaacattgaaaaaatcggttgcgatttcatttagcaaaggttgtacgactttaaaggaacatgacaactagact 32316667  T
Q  347 caagtatacctctcgat 363  Q
    | | |||||||||||||    
T  32316668 cgaatatacctctcgat 32316684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 401
Target Start/End: Original strand, 28174552 - 28174704
Alignment:
Q  247 gtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacc 346  Q
    ||||||||||||| ||||||   |||||||||||| |||||| |||| ||||| |||   || || |||||| ||||| ||||||||| |||||||||||    
T  28174552 gtttcttgataatgtgaagg---acacaacattggcaaaatcagttgtgatttgatttgacaaagtctgtacaactttaaaggaacagcgcaaccagacc 28174648  T
Q  347 -caagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa 401  Q
        ||||| |||| ||||| || ||||||||||||| ||||||||| ||||||||    
T  28174649 tgtcgtatagctcttgattttcttagtcagatgaggctaaactgtccagacaacaa 28174704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 32305961 - 32306019
Alignment:
Q  19 aaacagtcagcctcctaggtaaattactttacacttatgcatttatgattatattatga 77  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||    
T  32305961 aaacagtcagcctccttgataaattactttacacttatgcatttatgaatataatatga 32306019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 32814394 - 32814336
Alignment:
Q  19 aaacagtcagcctcctaggtaaattactttacacttatgcatttatgattatattatga 77  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||||    
T  32814394 aaacagtcagcctccttggtaaattactttacacttatgcattcatgaatataatatga 32814336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 28171417 - 28171497
Alignment:
Q  321 ctttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa 401  Q
    |||||||||||||| |||||||||||  ||||||| ||| ||||| || ||| ||||||||||||||||||  ||||||||    
T  28171417 ctttcaaggaacagcgcaaccagacctgagtatacttcttgatttgcttagtaagatgaggcaaaactgtcaagacaacaa 28171497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 32787182 - 32787130
Alignment:
Q  19 aaacagtcagcctcctaggtaaattactttacacttatgcatttatgattata 71  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  32787182 aaacagtcagcctccttggtaaattactttacatttatgcatttatgaatata 32787130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 32317376 - 32317434
Alignment:
Q  353 tacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 411  Q
    ||||||||||||| || ||||| ||||||||||| ||||||||||||||| ||||||||    
T  32317376 tacctctcgattttctaagtcatatgaggcaaaattgtcctgacaacaattagaataat 32317434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 32310094 - 32310138
Alignment:
Q  19 aaacagtcagcctcctaggtaaattactttacacttatgcattta 63  Q
    |||||||||||||||| |||||||||||||||| |||||||||||    
T  32310094 aaacagtcagcctccttggtaaattactttacatttatgcattta 32310138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 32564726 - 32564682
Alignment:
Q  19 aaacagtcagcctcctaggtaaattactttacacttatgcattta 63  Q
    |||||||||||||||| |||||||||||||||| |||||||||||    
T  32564726 aaacagtcagcctccttggtaaattactttacatttatgcattta 32564682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 28183044 - 28183094
Alignment:
Q  351 tatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa 401  Q
    ||||| ||| |||||||| ||||||||||||||||||||||| ||||||||    
T  28183044 tatacttcttgatttccttagtcagatgaggcaaaactgtccagacaacaa 28183094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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