View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_64 (Length: 410)
Name: NF18404_low_64
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_64 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 400
Target Start/End: Original strand, 343183 - 343577
Alignment:
| Q |
4 |
tatttgcaggtcatagttcatttctcttcttattggtgtatgccttcgaacaaatcctttctttgaagaagaattatattggcatccccctatcaagatg |
103 |
Q |
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| T |
343183 |
tatttgcaggtcatagttcatttctcttcttattggtgtatgccttcgaacgaatcctttctttgaagaagaattatattggcatccccc-atcaagatg |
343281 |
T |
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| Q |
104 |
tcgtcttccaatgccataagcccttgttttgaagttacgaaccgtctttccagtaagtacgtcgatttttaaagttactgtgcattagtttttgacatat |
203 |
Q |
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| T |
343282 |
tcgtcttccaatgccataagcccttgttttgaagttacgaaccgtctttccagtaagtacgtcgatttttaaagttactgtgcactagtttttgacatat |
343381 |
T |
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| Q |
204 |
ggtttcagtttagctttaacctaggatttcagttctcacttgttacattgtactgatatctaattaggaatgcatcattttgcttctcaggaagctaagg |
303 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
343382 |
ggtttcagtttagcttcaacctaggatttcagttctcacttgttacattgtactgatatctaattagggatgcatcattttgcttctcaggaagctaagg |
343481 |
T |
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| Q |
304 |
ttgcttacaccggggagaaccatctgcgccgagaatgtgaaaaatgggaaaaatgttgcttcctcgttatagtgatcatgtcagtttatgacctttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
343482 |
ttgcttacaccggggagaaccatctgcgccgagaaagtgaaaaatggg-aaaatgttgcttcctcgttatagtgatcatgtcagtttatgacctttg |
343577 |
T |
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