View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_65 (Length: 404)
Name: NF18404_low_65
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 8751484 - 8751743
Alignment:
| Q |
20 |
gggcgacccttatgtgatagttacagcttcctcgttgtttggtttgtaagaaacaaacaaaaactaaccttacacattatcgtttctaacttaccatatt |
119 |
Q |
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| T |
8751484 |
gggcgacacttatgtgatagttacagcttcctccttgtttggtttgtaagaaacaaacaaaaactaaccttacatattatcgtttctaacttgtcatatt |
8751583 |
T |
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| Q |
120 |
acatacttttttaactacaatataagggagaattaaaggtnnnnnnntggataagggaaaaagaatttgccccactgctctagtttatactattttctct |
219 |
Q |
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| T |
8751584 |
acatacttttttaactacaatataagggagaattaaaggtaaaaaaatggataagggaaaaagaatttgccccactactctagtttatactattttctct |
8751683 |
T |
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| Q |
220 |
ctcagtccttaaactacgaaacaaaagattttgataaataaagtaacgtatatgccatgc |
279 |
Q |
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| T |
8751684 |
ctcagtccttaagctacgaaacaaaagattttgataaataaagtaacgtatatgtcatgc |
8751743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 8751779 - 8751873
Alignment:
| Q |
302 |
gcttgcacatggtttatacgctggtgtagtagttaaagggcttatatacatactgtatgatgtagttgtgacgatttgatagatcacctttgctt |
396 |
Q |
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| T |
8751779 |
gcttgcacatggtttatacgctggtgtagtagttaaagggcttatatacatactgtatgatgtagttgtgacgatttgatagatcacctttgctt |
8751873 |
T |
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