View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_66 (Length: 403)
Name: NF18404_low_66
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 198 - 388
Target Start/End: Original strand, 48289640 - 48289831
Alignment:
| Q |
198 |
atagttgcataattgaaagttttaatccctcctttnnnnnnnn-gttttaatccctttaaaacccaattctttcaatttgactatgtattttcaaatacg |
296 |
Q |
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| T |
48289640 |
atagttgcataattgaaagttttaatccctcctttaaaaaaaaagttttaatccctttaaaaccaaattctttcaatttgactatgtattttcaaatacg |
48289739 |
T |
|
| Q |
297 |
tttaaactggtctctcaactatctttttcttttaagtgatgtaaatttgattacgtgtgtctgtgtcgactgaattttatacttgttgattc |
388 |
Q |
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| T |
48289740 |
tttaaactggtctctcaactattttttttttttaagtgatgcaaatttgattatgtgtgtctgtgtcaactgaattttatacttgttgattc |
48289831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 48288669 - 48288792
Alignment:
| Q |
55 |
aaaagttattttctcttatttttgcttacattttataacgaattgaatacaaatgattgaattgactccttcataatgttttgagcgcaacatttattgt |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48288669 |
aaaagttattttctcttatttttgcttacattttataacgaattgaatacaaatgattgaattgactccttcataatgttttgagcgcaacatttattgt |
48288768 |
T |
|
| Q |
155 |
caatatgattgtgagtatctcttt |
178 |
Q |
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| T |
48288769 |
caatatgattgtgagtatctcttt |
48288792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 48288600 - 48288660
Alignment:
| Q |
11 |
ataatactctatctgtcataaaatataagtaaaaattgatcaataaaagttattttctctt |
71 |
Q |
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| T |
48288600 |
ataatactctatctgtcttaaaatataagtaaaaattgatcaataaaaattattttctctt |
48288660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 19758380 - 19758343
Alignment:
| Q |
25 |
gtcataaaatataagtaaaaattgatcaataaaagtta |
62 |
Q |
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|||||||||||||||||||||||| |||| |||||||| |
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| T |
19758380 |
gtcataaaatataagtaaaaattggtcaacaaaagtta |
19758343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 33557888 - 33557847
Alignment:
| Q |
21 |
atctgtcataaaatataagtaaaaattgatcaataaaagtta |
62 |
Q |
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| T |
33557888 |
atctgtcctaaaacataagtaaaaattgatcaataaaagtta |
33557847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 2983176 - 2983209
Alignment:
| Q |
29 |
taaaatataagtaaaaattgatcaataaaagtta |
62 |
Q |
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| T |
2983176 |
taaaatataagtaaaaattgatcaataaaagtta |
2983209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 7343359 - 7343313
Alignment:
| Q |
16 |
actctatctgtcataaaatataagtaaaaattgatcaataaaagtta |
62 |
Q |
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||||| || ||| ||||||||||||||||||||||||| |||||||| |
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| T |
7343359 |
actctctccgtcctaaaatataagtaaaaattgatcaacaaaagtta |
7343313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 16866407 - 16866439
Alignment:
| Q |
30 |
aaaatataagtaaaaattgatcaataaaagtta |
62 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
16866407 |
aaaatataagcaaaaattgatcaataaaagtta |
16866439 |
T |
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