View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_68 (Length: 402)
Name: NF18404_low_68
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 6696654 - 6696276
Alignment:
| Q |
17 |
atttagcacatgcaaactttacccaccttctatgaagagttgcagagaacgcacacaaacatgtgctcggcaactcggcagtagtacaattacaatacac |
116 |
Q |
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| T |
6696654 |
atttagcacatgcaaactttatccaccttctatgaagagttgcagagaacacacacaaacatgtgctcggcaactcggtagtagtacaattacaatacac |
6696555 |
T |
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| Q |
117 |
caatacaacaccttgtctactaattaaaaaagttagaatgaaaagcaccatatgaaaactagctcttccacccactaccaaacctgctaaatttgttcta |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6696554 |
caatacaacacctagtctactaattaaaaaagttagaatgaaaagcaccatatgaaaactagctcttccacccactaccaaacctgctaaatttgttcta |
6696455 |
T |
|
| Q |
217 |
ccagcaatgccggaaccttatcgttgctttcttaccacttcagcagttttactggaggcctacggcctttacatatcaacattttgtgttttgatcgagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6696454 |
ccagcaatgccggaaccttatcgttgctttcttaccacttcagcagttttactggaggcctacggcctttacatatcaacattttgtgttttgatcgagt |
6696355 |
T |
|
| Q |
317 |
tgagttggccctaaccataaacacgagatcaattctgtttggcaatttgctatccacaacttccttcccttttcttctc |
395 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6696354 |
tgagttggccctaaccataaacatgagatcaattctgtttggcaatttgctatccacaacttccttcccttttcttctc |
6696276 |
T |
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