View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_69 (Length: 394)
Name: NF18404_low_69
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 33926117 - 33925801
Alignment:
| Q |
11 |
cacagaacaaatcttttgcagcaacacaagcacaacaagatggttgtactgggaattataggattttttattcaccttatggcaattttctagtacctgt |
110 |
Q |
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| T |
33926117 |
cacagaacaaatcttttgcagcaacacaagcacaacaagatggttgtactgggaattataggattttttattcaccttatggcaattttctagtacctgt |
33926018 |
T |
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| Q |
111 |
agttccaactcatgcagaactagcctagtaattcttgtattggtgccctaattcatggattttataatgtcaagttgcaagttctcatcttaaacagtaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33926017 |
agttccaactcatgcagaactagcctagtaattcttgtattggtgccctaattcatggattttataatgtcaagttgcaagttctcatcttaaacagtaa |
33925918 |
T |
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| Q |
211 |
caccataaaagtttgtttggatcgacatatttgagcttatctgctagaataatcgaataagcacttgggagactgtttgagagagtttatgacgatcagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33925917 |
caccataaaagtttgtttggatcgacatatttgagcttatctgctagaataatcgaataagcacttgggagactgtttgagagagtttatgacgatcagt |
33925818 |
T |
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| Q |
311 |
gatgaaattcataagtt |
327 |
Q |
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| T |
33925817 |
gatgaaattcataagtt |
33925801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 329 - 394
Target Start/End: Complemental strand, 33925767 - 33925702
Alignment:
| Q |
329 |
agcttatgaaaacgcttataactttaatgaaaacattttaactttatcttttgttatagaaatagc |
394 |
Q |
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| T |
33925767 |
agcttatgaaaacgcttatagctttaatgaaaacattttaactttatcttttgttatagaaatagc |
33925702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 22667519 - 22667485
Alignment:
| Q |
267 |
ataagcacttgggagactgtttgagagagtttatg |
301 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
22667519 |
ataagcacttgtgagactgtttgagagagtttatg |
22667485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 22724158 - 22724124
Alignment:
| Q |
267 |
ataagcacttgggagactgtttgagagagtttatg |
301 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
22724158 |
ataagcacttgtgagactgtttgagagagtttatg |
22724124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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