View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_71 (Length: 389)
Name: NF18404_low_71
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_71 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 52029174 - 52029547
Alignment:
| Q |
16 |
caaaggcgtgcattttgctcttgagtctgatttcctttggtgaggaaaggataatcagtgtagccaataacaggatcctgtgtgtaaaatgtcttcctgt |
115 |
Q |
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| T |
52029174 |
caaaggcgtgcatttagctcttgagtctgatttcctttggtgaggaaaggataatcagtgtagccaataacaggatcctgtgtgtaaaatgtcttcctgt |
52029273 |
T |
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| Q |
116 |
tatacttgttcagaggagcattaagcttaaaccttaaaaccaaatctggattagagatgaaaagacgaccaaatgataccaaatcagcatcaccttgaac |
215 |
Q |
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| T |
52029274 |
tatacttgttcagaggagcattaagcttaaaccttaaaaccaaatctggattagagatgaaaagacgaccaaatgataccaaatcagcatcaccttgaac |
52029373 |
T |
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| Q |
216 |
tacagcttccattcctaacttcctattgaatccaccactgcacatgaatgttccttcataagcttttcttaggttcctcatcaaatgagcctcttcttct |
315 |
Q |
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| T |
52029374 |
tacagcttccattcctaacttcctattgaatccaccactgcacatgaatgttccctcataagcttttcttaggttcctcatcaaatgagcctcttcttct |
52029473 |
T |
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| Q |
316 |
tccttgtcgtactcagtttttccataagctgtatatcgaggttgagtaacatgaagatacgtaagttttctacc |
389 |
Q |
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| T |
52029474 |
tccttgtcgtactcagtttttccataagctgtatatcgaggttgagtaacatgaagatacgtaagttttctacc |
52029547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 1071871 - 1071834
Alignment:
| Q |
99 |
gtaaaatgtcttcctgttatacttgttcagaggagcat |
136 |
Q |
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| T |
1071871 |
gtaaaatgtctccctgttatacttgtttagaggagcat |
1071834 |
T |
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