View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_73 (Length: 386)
Name: NF18404_low_73
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 370
Target Start/End: Original strand, 32927503 - 32927870
Alignment:
| Q |
6 |
gtcgaagaatatgaagaattagaaccatgtgacaaagaaacacctctcttggaggatcgtgccaccttagaagcagacttctttttgtttaactttttta |
105 |
Q |
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| T |
32927503 |
gtcgaagaccatgaagaattagaaccatgtgacaaagaaacacctctcttggaggatcgtgccaccttagaagcagacttctttttgtttaactttttta |
32927602 |
T |
|
| Q |
106 |
tagatcgaatcaacatgtacctgtctt---tcaaagggggtctagcagtacgttttagattcaacaaagatgtgtcacccttagaaccagacttaagatt |
202 |
Q |
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| T |
32927603 |
tagatcgaatcaacatgtacctgtcttctttcaaagggggtctagcagtacgttttagattcaacaaagatgtgtcacccttagaaccagacttaagatt |
32927702 |
T |
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| Q |
203 |
attattggaaataattttggatgtcgcttcctttgcagataaagatgacgccatcttttcccccacaactaaccctttctttttacaaacattgtaactc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32927703 |
attattggaaataattttggatgtcgcttcctttgcagataaagatgacgccatcttttcccccacaactaaccctttctttttacaaacattgtaactc |
32927802 |
T |
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| Q |
303 |
cacggaccttgagacattatttcttgtcaacctggaggaggaatattatcacatccaacgtcatttct |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32927803 |
cacggaccttgagacattatttcttgtcaacctggaggaggaatattatcacatccaacgtcatttct |
32927870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 27434492 - 27434358
Alignment:
| Q |
57 |
gaggatcgtgccaccttagaagcagacttctttttgtttaacttttttatagatcgaatcaacatgtacctgtctttcaaagggggtctagcagtacgtt |
156 |
Q |
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||||| ||||||||||||||||||||||||||| ||||| |||||||||| | ||||||| |||||||||| |||| || | ||| || | ||| |
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| T |
27434492 |
gaggaacgtgccaccttagaagcagacttctttcgatttaaattttttatagcacaaatcaacctgtacctgtccttcattggaagcctaacaatgtgtt |
27434393 |
T |
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| Q |
157 |
ttagattcaacaaagatgtgtcacccttagaacca |
191 |
Q |
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| T |
27434392 |
tcagattcaacaaagatgtgacactcttagaacca |
27434358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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