View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_74 (Length: 386)
Name: NF18404_low_74
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 3448904 - 3448543
Alignment:
| Q |
11 |
cagagaaggtgcagcgatgataaggattcaaggagaggtgaaaaattcaggtaacattgcgaaaactgtaatgcacgtaaggtgtttgatgaaagaatta |
110 |
Q |
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| T |
3448904 |
cagagaaggtgcagcgatgataaggattcaaggagaggtgaaaaattcaggtaacattgcgaaaactgtaatgcatgtaaggtgtttgatgaaagaattg |
3448805 |
T |
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| Q |
111 |
agagtgcttagtaatatggatgacgatgaagttttcacgttttcgaagagaattcaagcgccttatgatattgttgcgcagacgaaacagatgggtagat |
210 |
Q |
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| T |
3448804 |
agagtgcttagtaatatggatgacgatgaagttttcacgttttcgaagagaattcaagcgccttatgatattgttgcgcagacgaaacagatgggtagat |
3448705 |
T |
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| Q |
211 |
tacctgttgtgcattttgctgccagtgggattgtgactccggcggacgcagcgttgatgatgcagttgggttgtcatggtgtgtttgtgggagcagaggt |
310 |
Q |
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| T |
3448704 |
tacctgttgtgcattttgctgccggtgggattgtgactcccgcggacgcggcgttgatgatgcagttgggttgtcatggtgtgtttgtgggagcagaggt |
3448605 |
T |
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| Q |
311 |
ttttggttatgaggattgttttaaacgtgttaagggtattgttcaagctgttcggaattata |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448604 |
ttttggttatgaggattgttttaaacgtgttaagggtattgttcaagctgttcggaattata |
3448543 |
T |
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