View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_76 (Length: 377)
Name: NF18404_low_76
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 43240006 - 43240348
Alignment:
| Q |
18 |
agatgtatcatctaacatggacttctcagtttttgacccttcttcttgggaacatgggtttcatcctccttggaggcaaggcacttaaggtaaataaagt |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43240006 |
agatgtatcacctaacatggacttctcagtttttgacccttcttcttgggaacatgggtttcatcctccttggaggcaaggcacttaaggtaaataaagt |
43240105 |
T |
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| Q |
118 |
ttacaaatatatataaatgattggatcaattaattaaatgagtaattttttatataaa-gtggttgttttttgtgataggaaatcaacgcagaatttagt |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43240106 |
ttacaaatata----aatgattggatcaattaattaaatgagtaattttttatataaaagtggttgttttttgtgataggaaatcaacgcagaatttagt |
43240201 |
T |
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| Q |
217 |
gattctccttggagacttcaatactacatagtagtaacaggagctgcatacttcattttttccttctccattccaacattatcttctatgagaaattggc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43240202 |
gattctccttggagacttcaatactacatagtagtaacaggagcagcatacttcattttttccttctccattccaacattatcttctatgagaaattggc |
43240301 |
T |
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| Q |
317 |
taggagcttcagctgttgtcaccctagcatacatagcatttcttgtc |
363 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43240302 |
taggagcttcagctgttgtcactctagcatacatagcatttcttgtc |
43240348 |
T |
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