View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_77 (Length: 377)
Name: NF18404_low_77
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 50914057 - 50913702
Alignment:
| Q |
18 |
attatttggttattgaaattaatgttttacttctattctatttgtagattatggctggtcgtagagaactggcaatggtagactcctcataattatgtgc |
117 |
Q |
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| T |
50914057 |
attatttggttattgaaattaatgttttacttctattctatttgtagattatggctggtcgtagagaactggcaatggtagactcctcataattgtgtgc |
50913958 |
T |
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| Q |
118 |
tttctataataac------gataagttcatgtcaagatcatagaaaggtttgtatggccttctaatatatgcaaaagaattaccagtcttggtgcatgca |
211 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50913957 |
tttctataataactttaacgataagttcatgtcaagatcatagaaaggtttgtatggcctcctaatatatgcaaaagaattaccagtcttggtgcatgca |
50913858 |
T |
|
| Q |
212 |
atgcaactatttgagatgacacaaaaaataacacataaaaatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50913857 |
atgcaactatttgagatgacacaaaaaataacacataaaaatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgac |
50913758 |
T |
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| Q |
312 |
aaagaaatttccgatgtacaaaacttgtctcaactagtcagtcctactatcctatg |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50913757 |
aaagaaatttccgatgtacaaaacttgtctcaactagtcagtcctactatcctatg |
50913702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 203 - 367
Target Start/End: Complemental strand, 38038945 - 38038773
Alignment:
| Q |
203 |
gtgcatgcaatgcaactatttgagatgacacaaaaaataacacataaa--------aatatagtttcttaaggttatcatttaagatttccacttaagag |
294 |
Q |
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| T |
38038945 |
gtgcatgcaatgcaattatttgagatgacacaaaaaacaacacataaattcacaagaatatagtttcataaggttctcatttatgatttcaacttaagag |
38038846 |
T |
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| Q |
295 |
gaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtcagtcctactatcctatg |
367 |
Q |
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| T |
38038845 |
gaaacatcaaaattgacaaagaagttgctgatgtacaaaaattgtctcaactggtcaatcctactctcctatg |
38038773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 367
Target Start/End: Complemental strand, 38027911 - 38027681
Alignment:
| Q |
155 |
aaaggtttgtatggccttctaatatatgcaaaagaattaccagtcttgg----------tgcatgcaatgcaactatttgagatgacacaaaaaataaca |
244 |
Q |
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| T |
38027911 |
aaaggtttgtatggcccagtaatatatgcaaaagaattatcagtcttggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaaca |
38027812 |
T |
|
| Q |
245 |
cataaa--------aatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgacaaagaaatttccgatgtacaaaact |
336 |
Q |
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|||||| ||||||||||||||||||| |||| |||| ||||||| ||||||||| |||||||||||| ||||||||| | ||||||| ||| | |
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| T |
38027811 |
cataaattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaacatcaaaattgataaagaaattgctgatgtacgaaaat |
38027712 |
T |
|
| Q |
337 |
tgtctcaactagtcagtcctactatcctatg |
367 |
Q |
| |
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| T |
38027711 |
tatctcaactggtcaatcctactatcctatg |
38027681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 367
Target Start/End: Complemental strand, 38032624 - 38032508
Alignment:
| Q |
251 |
aatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtc |
350 |
Q |
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| T |
38032624 |
aatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgtctcaactggtc |
38032525 |
T |
|
| Q |
351 |
agtcctactatcctatg |
367 |
Q |
| |
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| T |
38032524 |
aatcctactctcctatg |
38032508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 366
Target Start/End: Complemental strand, 38035460 - 38035288
Alignment:
| Q |
203 |
gtgcatgcaatgcaactatttgagatgacac-aaaaaataacacataaa--------aatatagtttcttaaggttatcatttaagatttccacttaaga |
293 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||| |||||||||| |||||| |||||||| ||| ||||||||||||||||||||||| |
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| T |
38035460 |
gtgcatgcaatgcaattatttgaaatgacactaaaaaagaacacataaattcagaagaatataatttcttaaagttctcatttaagatttccacttaaga |
38035361 |
T |
|
| Q |
294 |
ggaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtcagtcctactatcctat |
366 |
Q |
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|||| |||||||||||||||| ||||| | ||||||||||| ||||||||| | |||| ||||| | |||||| |
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| T |
38035360 |
ggaaacatcaaaattgacaaaaaaattgctgatgtacaaaaattgtctcaattggtcaatcctattgtcctat |
38035288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 55082565 - 55082657
Alignment:
| Q |
265 |
aggttatcatttaagatttccacttaagaggaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtcagtccta |
357 |
Q |
| |
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||||| |||||| |||||||||||||||||||| |||||||| |||||||||||| | ||||||| || |||||||||||||||| ||||| |
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| T |
55082565 |
aggttctcatttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcaactagtcaatccta |
55082657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 50906624 - 50906731
Alignment:
| Q |
251 |
aatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgac-aaagaaatttccgatgtacaaaacttgtctcaactagt |
349 |
Q |
| |
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|||||||||| |||| || |||||| ||||||||||||||||||| ||||||||| || ||| ||| || ||| ||||||| ||||||||| |||| |
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| T |
50906624 |
aatatagttttgtaagattctcatttctgatttccacttaagaggaaacatcaaaataaacaaaacaaaattgtgatatacaaaagttgtctcaagtagt |
50906723 |
T |
|
| Q |
350 |
cagtccta |
357 |
Q |
| |
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| T |
50906724 |
caatccta |
50906731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 38035525 - 38035479
Alignment:
| Q |
155 |
aaaggtttgtatggccttctaatatatgcaaaagaattaccagtctt |
201 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||| |||||| |
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| T |
38035525 |
aaagggttgtatggcctcgtaatatatgcaaaagaattactagtctt |
38035479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 203 - 367
Target Start/End: Complemental strand, 21608655 - 21608483
Alignment:
| Q |
203 |
gtgcatgcaatgcaactatttgagatgacacaaaaaataacacataaa--------aatatagtttcttaaggttatcatttaagatttccacttaagag |
294 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| |||||| || |||||| |
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| T |
21608655 |
gtgcatgcaatgcaattatttgagatgacacaaaaaacaacacataaattcacaagaatatagtttcataaggttctcatttatgatttcaacataagag |
21608556 |
T |
|
| Q |
295 |
gaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtcagtcctactatcctatg |
367 |
Q |
| |
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||| |||||||||||||||||||||| | ||||||||||| |||||||||| |||| ||||||| ||||||| |
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| T |
21608555 |
gaaacatcaaaattgacaaagaaattactgatgtacaaaaaatgtctcaactggtcaatcctactctcctatg |
21608483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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