View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_79 (Length: 365)

Name: NF18404_low_79
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_79
NF18404_low_79
[»] chr4 (5 HSPs)
chr4 (64-351)||(17507443-17507732)
chr4 (1-65)||(17507352-17507416)
chr4 (1-56)||(1833943-1833998)
chr4 (1-50)||(23427973-23428022)
chr4 (89-162)||(23428087-23428160)
[»] chr7 (4 HSPs)
chr7 (72-254)||(6240250-6240426)
chr7 (72-122)||(6211441-6211491)
chr7 (1-58)||(6211532-6211589)
chr7 (1-58)||(6240468-6240525)
[»] chr2 (1 HSPs)
chr2 (104-228)||(15489987-15490111)
[»] chr5 (1 HSPs)
chr5 (79-227)||(30066838-30066986)
[»] chr6 (1 HSPs)
chr6 (134-243)||(27568643-27568752)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 64 - 351
Target Start/End: Original strand, 17507443 - 17507732
Alignment:
Q  64 ttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17507443 ttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacacggaatccagcaatattgcttgacatgctgctaaacaacctg 17507542  T
Q  164 ttatatattctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagtatcctaaagt 263  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17507543 ctatatattctgattctcatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagtatcctaaagt 17507642  T
Q  264 ac--tttctatcttgcttatttgagtaagcaattagattcatattttcttcattgacatttgtaggaaagagtatacaatagtataaagt 351  Q
    ||  |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17507643 actttttctatcttgcttttctgagtaagcaattagattcatattttcttcattgacatttgtaggaaagagtataccatagtataaagt 17507732  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17507352 - 17507416
Alignment:
Q  1 ttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaaaacactt 65  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17507352 ttcacttgttctctaataaagtgaaattttgccttaatgtgtttgcttctttcatgaaaacactt 17507416  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1833998 - 1833943
Alignment:
Q  1 ttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatg 56  Q
    ||||| |||||||| |||||||||||| |||||| |||||||||| ||||||||||    
T  1833998 ttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatg 1833943  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23427973 - 23428022
Alignment:
Q  1 ttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttct 50  Q
    ||||||||||||||||||||||||||| ||||||  |||||||| |||||    
T  23427973 ttcacttgttctctgataaagtgaaatattgcctctatgtgtttacttct 23428022  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 23428087 - 23428160
Alignment:
Q  89 gcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacct 162  Q
    |||||||||||||||||||||||||  | ||| |  |||||| | |||||| ||||||||| ||||| ||||||    
T  23428087 gcttgcaaacttctatcttcagttctcttaacacataatccaaccatattgtttgacatgcagctaagcaacct 23428160  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 6240426 - 6240250
Alignment:
Q  72 aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatat 171  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| ||||||||  |||||| | ||||||| ||||||||||||||| ||| |  |||| |     
T  6240426 aatgagaaatgcaataggcttgcatacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaaa 6240327  T
Q  172 tctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagta 254  Q
    || |||||||| ||||||      |||| | |||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  6240326 tcagattcacaagttgag------accacaggttgtttctttgtacaccatgatattggagcattcataaacttaaacaagta 6240250  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 6211491 - 6211441
Alignment:
Q  72 aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaaccc 122  Q
    |||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  6211491 aatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaaccc 6211441  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6211589 - 6211532
Alignment:
Q  1 ttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaa 58  Q
    ||||||||||||||| | ||||||||| ||  || |||||||||||||||| ||||||    
T  6211589 ttcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttccatgaa 6211532  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6240525 - 6240468
Alignment:
Q  1 ttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaa 58  Q
    ||||||||||||||| | ||||||||| ||  || |||||||||||||||| ||||||    
T  6240525 ttcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttccatgaa 6240468  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 15489987 - 15490111
Alignment:
Q  104 tcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatattctgattcacatgttgagaaggctaccataag 203  Q
    |||||| |||||| ||| | ||||||||| ||| ||||||||||| ||||||  |||||| |||||| ||| ||| | | ||||||| ||||| || |      
T  15489987 tcttcaattcctttaacacagaatccagccatagtgcttgacatgatgctaagaaacctgatatataatctaatttataggttgagagggctatcacaga 15490086  T
Q  204 ttgtttctttgtacaccatgatatt 228  Q
    ||||||| |||||||||||||||||    
T  15490087 ttgtttccttgtacaccatgatatt 15490111  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 227
Target Start/End: Complemental strand, 30066986 - 30066838
Alignment:
Q  79 aatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatattctgatt 178  Q
    ||||||||||||||||| | ||| || ||||||||||| ||| |  |||| ||| ||| ||||||||||||||||||||| |||   || || || ||||    
T  30066986 aatgcaataggcttgcagatttcaatattcagttcctttaacacataatctagccatactgcttgacatgctgctaaacaccctacaatgtactcagatt 30066887  T
Q  179 cacatgttgagaaggctaccataagttgtttctttgtacaccatgatat 227  Q
    |||| ||||| |   |||  | |||||| || |||||||||||||||||    
T  30066886 cacaagttgaaagtactaatacaagttgcttttttgtacaccatgatat 30066838  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 27568643 - 27568752
Alignment:
Q  134 atattgcttgacatgctgctaaacaacctgttatatattctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggata 233  Q
    ||||||| ||||||||||| | ||| ||||  ||||| || |||||||| ||||| || ||||| ||  |||| ||||| | ||||||||| ||||||      
T  27568643 atattgcctgacatgctgccatacaccctgcaatatactcagattcacaggttgacaatgctacaattggttgcttcttagcacaccatgaaattggagc 27568742  T
Q  234 attcataaac 243  Q
    ||||||||||    
T  27568743 attcataaac 27568752  T

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