View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_8 (Length: 696)
Name: NF18404_low_8
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 483
Target Start/End: Original strand, 35773001 - 35773471
Alignment:
| Q |
13 |
agaagaagaagactggaccaacaatgagcaagtgatgttggacagagttgatagtagtcatgtgaagatcgacagtctgcacctcgaatcagactcttgg |
112 |
Q |
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| T |
35773001 |
agaagaagaagacttgaccaacaatgagcaagtgatgttggacagagttgatagtagtcatgtgaagatcgacagtccgcaccttgaatcagactcttgg |
35773100 |
T |
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| Q |
113 |
gatccgatttccgaactagaaagtttgttacatgatagttataagttgtctcctatgtgcactgactcaacaactgtttcagtgctccaagcttcaaatg |
212 |
Q |
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| T |
35773101 |
gatccgatttccgaactagaaagtttgttacatgatagttataagttgtctcctatgtgcactgactcaacaactgtttcagtgctccaagcttcaaatg |
35773200 |
T |
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| Q |
213 |
ttgcagctatttttgaaaatttagaaacccttttggagacaccacttgaaatgctctcttcagacgatgaagtgaagcaaaagttccatcaaattttgga |
312 |
Q |
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| T |
35773201 |
ttgcagctatttttgaaaatttagaaacccttttggagacaccacttgaaattctctcttcagacgatgaagtgaagcaaaagttccatcaaattttgga |
35773300 |
T |
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| Q |
313 |
acaacttggccaatttgaaaatcaaatccctattaggcttcatcatgttatttgcaagttaagaactttcattgaaggggttgatgtcaaatttgcgagt |
412 |
Q |
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| T |
35773301 |
acaacttggccaatttgcaaatcaaatccctattaggcttcatcatgtcatttgcaagttaagaactttcattgaaggggttgatgtcaaatttgcgagt |
35773400 |
T |
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| Q |
413 |
gctcaaaatactattcaagattatgatcaactgcttcaatcaaggtcacttatatcaaagaaattggaaag |
483 |
Q |
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| T |
35773401 |
gctcaaaatactattcaagattatgatcaactgcttcaatcaaggtcacttatatcaaagaaattggaaag |
35773471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 480 - 657
Target Start/End: Original strand, 35773775 - 35773952
Alignment:
| Q |
480 |
aaaggcattttccgccaataaaatttgatatatcaattcatgcatatattaacatttagtaattttgtcacctctgtggattcaaattcacaatgaacat |
579 |
Q |
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| T |
35773775 |
aaaggcattttccgccaataaaatttgatatatcaattcatgcatatattaacatttagtaattttgtcacctctgtggattcaaattcacaatgaacat |
35773874 |
T |
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| Q |
580 |
ctgattatttttgatattagattgtaattgtcgattccatcgatgcaaaaggagaaagacactacctctgtggatagc |
657 |
Q |
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| T |
35773875 |
ctggttattttttatattagattgtaattgtcgattccatcgatgcaaaaggagaaagacactacctctgtggatagc |
35773952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 638
Target Start/End: Original strand, 35777097 - 35777148
Alignment:
| Q |
588 |
ttttgatattagattgtaa-ttgtcgattccatcgatgcaaaaggagaaaga |
638 |
Q |
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| T |
35777097 |
ttttgatattagaatgtaaattgtcgattccatcaatggaaaaggagaaaga |
35777148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 2635030 - 2634981
Alignment:
| Q |
339 |
tccctattaggcttcatcatgttatttgcaagttaagaactttcattgaa |
388 |
Q |
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| T |
2635030 |
tccctattaggctacatcatgttgtttgcaacttaagaactttcattgaa |
2634981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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