View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_80 (Length: 360)

Name: NF18404_low_80
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_80
NF18404_low_80
[»] chr7 (2 HSPs)
chr7 (9-315)||(6670655-6670978)
chr7 (148-293)||(7811231-7811376)
[»] chr1 (10 HSPs)
chr1 (146-316)||(159236-159406)
chr1 (155-315)||(36776972-36777132)
chr1 (161-276)||(9133365-9133480)
chr1 (149-238)||(15199684-15199773)
chr1 (170-240)||(15218792-15218862)
chr1 (9-80)||(9133206-9133277)
chr1 (9-80)||(36776833-36776904)
chr1 (271-316)||(9134795-9134840)
chr1 (9-67)||(159074-159132)
chr1 (263-315)||(15199786-15199838)
[»] chr2 (3 HSPs)
chr2 (147-316)||(18856834-18857003)
chr2 (149-315)||(22834252-22834406)
chr2 (151-315)||(29807214-29807378)
[»] chr6 (4 HSPs)
chr6 (145-315)||(23667396-23667566)
chr6 (174-304)||(21272962-21273092)
chr6 (9-68)||(23667261-23667320)
chr6 (9-80)||(21273193-21273264)
[»] chr4 (2 HSPs)
chr4 (145-316)||(21278791-21278962)
chr4 (9-80)||(21279064-21279135)
[»] chr5 (4 HSPs)
chr5 (9-315)||(25802581-25802904)
chr5 (145-316)||(21345565-21345737)
chr5 (9-68)||(21345405-21345464)
chr5 (145-240)||(37634896-37634991)
[»] chr3 (7 HSPs)
chr3 (145-315)||(51464953-51465123)
chr3 (144-228)||(3570327-3570411)
chr3 (230-315)||(3572095-3572180)
chr3 (9-73)||(3570183-3570248)
chr3 (9-68)||(51464800-51464859)
chr3 (148-278)||(2289720-2289850)
chr3 (149-285)||(14241807-14241946)
[»] scaffold0073 (1 HSPs)
scaffold0073 (9-315)||(40567-40890)
[»] scaffold0741 (1 HSPs)
scaffold0741 (145-239)||(6203-6297)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 6670655 - 6670978
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccctcgaatgttcca------------tcatttaaacggagga 96  Q
    |||||||||||||||||||| | || ||||||||||| ||||||| ||||||||||||||||| || |||||            ||||||||||||||||    
T  6670655 agaagaaggcaacatagtgagccacgtagtatcaagcatggaatcattattaccaatccctcggatattccaaaacaaaattattcatttaaacggagga 6670754  T
Q  97 agaggattctgagaacggg------atgaaaccttttgcaaattcnnnnnnnncctgagactttgaaactacctctttaaatggcacctcattcacagca 190  Q
    ||||||  |||||| ||||      ||||| |||||||||  |||        | |||||||||||||||||||||||||||||||||||||||||||||    
T  6670755 agaggaccctgagagcgggttttgtatgaagccttttgcacgttctttttcttc-tgagactttgaaactacctctttaaatggcacctcattcacagca 6670853  T
Q  191 gcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtacaggagcaccatctggcgccacaatactactgacatctaatgttt 290  Q
    |||||||||||||| |||| ||||||||| || ||||| |||| ||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  6670854 gcctttgctagccaagtttgcataaaatctaactctttctgcaacactgggtctacaggagcaccatccggcgccataatactactgacatctaatgttt 6670953  T
Q  291 tttccttgactggggataaaatatg 315  Q
    ||||||||| |||||||||||||||    
T  6670954 tttccttgattggggataaaatatg 6670978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 293
Target Start/End: Original strand, 7811231 - 7811376
Alignment:
Q  148 agactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtaca 247  Q
    ||||||||||||||||||| |||||||  | ||| ||||||| ||||  |||| ||| |||| ||||||||| |||||||||||||||||||| | ||||    
T  7811231 agactttgaaactacctctgtaaatggtgcatcagtcacagctgcctccgctaaccaagtttgcataaaatctaagtctttttgcagcaccggatctaca 7811330  T
Q  248 ggagcaccatctggcgccacaatactactgacatctaatgtttttt 293  Q
     | ||| | || |  || | ||||||||||||||||||||||||||    
T  7811331 tgtgcatcttccgaagctataatactactgacatctaatgtttttt 7811376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 146 - 316
Target Start/End: Original strand, 159236 - 159406
Alignment:
Q  146 tgagactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgta 245  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||||| |||||||| ||||||||||||| ||    
T  159236 tgagactttgaaactacctctttaaatggcacctcattcacaatggcctttgctagccaagtttgcataaaatctaagtctttctgcagcaccgggtcta 159335  T
Q  246 caggagcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatgc 316  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  159336 caggagcaccatttggcgccacaatactactgacatctaaagttttttccttgactggggataaaatatgc 159406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 155 - 315
Target Start/End: Original strand, 36776972 - 36777132
Alignment:
Q  155 gaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtacaggagcac 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||| |||||||| || || |||||    
T  36776972 gaaactacctctttaaatggcacctcattcacagcagcctttgctagccaagttttcataaaatctaagtctttgtgcaacaccgggtctatagtagcac 36777071  T
Q  255 catctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatg 315  Q
    |||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  36777072 catccgacgccataatactactgacatctaatgttttttccttgattggggataaaatatg 36777132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 9133365 - 9133480
Alignment:
Q  161 acctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtacaggagcaccatctg 260  Q
    |||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||| ||||||||  ||||||||||||||||| ||||||||||||    
T  9133365 acctctttaaatggcaactcattcatagcagcctttgctagccaagtttgcataaaatctaagtctttccgcagcaccgggtgtacatgagcaccatctg 9133464  T
Q  261 gcgccacaatactact 276  Q
    ||||||||||||||||    
T  9133465 gcgccacaatactact 9133480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 15199684 - 15199773
Alignment:
Q  149 gactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcacc 238  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||  || |||||||||    
T  15199684 gactttgaaattacctctttaaatgtcacctcattcacagcagcctttgctagccaagtttgaataaaatccaagttcttctgcagcacc 15199773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 15218792 - 15218862
Alignment:
Q  170 aatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgg 240  Q
    |||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| || ||| |||||||    
T  15218792 aatggcacctcattcacaacagcctttgctagccaagtttgcataaaatccaagtccttctgctgcaccgg 15218862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 9133206 - 9133277
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccctcgaatgttcca 80  Q
    ||||||||||||  |||||||| || |||||||||||||| |||| |||||||||||||| || ||||||||    
T  9133206 agaagaaggcaaactagtgaaccacgtagtatcaagcctgaaatcattattaccaatcccccggatgttcca 9133277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 36776833 - 36776904
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccctcgaatgttcca 80  Q
    ||||||||||||| |||||||| || |||||||||||  |||| | |||||||||||||| |||||||||||    
T  36776833 agaagaaggcaacgtagtgaaccacgtagtatcaagctgggaaccattattaccaatcccccgaatgttcca 36776904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 9134795 - 9134840
Alignment:
Q  271 actactgacatctaatgttttttccttgactggggataaaatatgc 316  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||    
T  9134795 actactgatatctaaagttttttccttgattggggataaaatatgc 9134840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 159074 - 159132
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatcc 67  Q
    |||||||| ||||||||| ||| || ||||||||||||| ||||| ||||||| |||||    
T  159074 agaagaagacaacatagtaaaccacgtagtatcaagcctagaatcattattactaatcc 159132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 15199786 - 15199838
Alignment:
Q  263 gccacaatactactgacatctaatgttttttccttgactggggataaaatatg 315  Q
    |||||||||||| ||| ||||||||||||||| ||||  || |||||||||||    
T  15199786 gccacaatactaatgatatctaatgttttttctttgatgggagataaaatatg 15199838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 147 - 316
Target Start/End: Complemental strand, 18857003 - 18856834
Alignment:
Q  147 gagactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtac 246  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||  |||| ||||||||| |||||||| ||||||||||||| |||    
T  18857003 gagactttgaaactacctctttaaatggcacctcattaacaacaacctttgctagcctggtttgcataaaatctaagtctttctgcagcaccgggtctac 18856904  T
Q  247 aggagcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatgc 316  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18856903 aggagcaccatctggcgccacaatactactgatatctaatgttttttccttgactggggataaaatatgc 18856834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 149 - 315
Target Start/End: Original strand, 22834252 - 22834406
Alignment:
Q  149 gactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtacag 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| || ||||||||||| | ||| |    
T  22834252 gactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccaagtttgcataaaatctaagtccttctgcagcaccggatctaccg 22834351  T
Q  249 gagcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatg 315  Q
    ||            |||||||||||||||| ||||||||||||||| ||||  || |||||||||||    
T  22834352 ga------------gccacaatactactgatatctaatgttttttctttgatgggagataaaatatg 22834406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 315
Target Start/End: Complemental strand, 29807378 - 29807214
Alignment:
Q  151 ctttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtacagga 250  Q
    |||||||||||||||| |||| ||||| ||||||||| || ||||||||| ||| | || ||||||||| ||||| || || |||||||| | ||   |     
T  29807378 ctttgaaactacctctgtaaacggcacttcattcacaacaacctttgctaaccaagattgcataaaatctaagtccttctgtagcaccggatctatctgt 29807279  T
Q  251 gcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatg 315  Q
    ||||||   || || ||||||||||||||||||||| ||||||| ||||  || |||||||||||    
T  29807278 gcaccagtcggagcaacaatactactgacatctaatattttttctttgatgggagataaaatatg 29807214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 23667396 - 23667566
Alignment:
Q  145 ctgagactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgt 244  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||||| |||| |||||||| |    
T  23667396 ctgagacttggaaactacctctttaaatggcacctcattcacagcagcctttgctagccaagtttgcataaaatctaattctttctgcaacaccgggtct 23667495  T
Q  245 acaggagcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatg 315  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  23667496 acaggagcaccatccggcgccataatactactgacatctaatgttttttccttgacttgggataaaatatg 23667566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 21273092 - 21272962
Alignment:
Q  174 gcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtacaggagcaccatctggcgccacaatact 273  Q
    ||||||||||| ||||||||||||||||||| |||| || |||||| |||||||| | || |||||||| ||||||||||||||||| | ||| ||||||    
T  21273092 gcacctcattctcagcagcctttgctagccaagtttgcaaaaaatctaagtctttcttcaacaccgggtctacaggagcaccatctgacaccataatact 21272993  T
Q  274 actgacatctaatgttttttccttgactggg 304  Q
    |||||| ||||||| ||| ||||||||||||    
T  21272992 actgacctctaatgctttatccttgactggg 21272962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 23667261 - 23667320
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccc 68  Q
    |||||||||||||||||||||| || ||||| |||||  |||||| ||||||||||||||    
T  23667261 agaagaaggcaacatagtgaaccacgtagtaacaagcagggaatcattattaccaatccc 23667320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 21273264 - 21273193
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccctcgaatgttcca 80  Q
    ||||||||||| |||||||||| ||  |||||||||   |||||| |||||||||||||| || ||||||||    
T  21273264 agaagaaggcagcatagtgaaccacgaagtatcaagtagggaatcattattaccaatcccccggatgttcca 21273193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 145 - 316
Target Start/End: Complemental strand, 21278962 - 21278791
Alignment:
Q  145 ctgagactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||||||| ||||||||||||| |    
T  21278962 ctgagactttgaaactacctctttaaatggcacctcattcacagcatcctttgctagccaagtttgcataaaatctaagtctttctgcagcaccgggtct 21278863  T
Q  245 acaggagcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatgc 316  Q
    |||||||||||||| | | ||||||||||| |||||||||| || |||||||||||||||||||||||||||    
T  21278862 acaggagcaccatccgacaccacaatactattgacatctaaagtattttccttgactggggataaaatatgc 21278791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 21279135 - 21279064
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccctcgaatgttcca 80  Q
    |||||||||||||||||||||| || |||||||||||||| ||||  ||||||||||||  || ||||||||    
T  21279135 agaagaaggcaacatagtgaaccacgtagtatcaagcctgaaatcaatattaccaatcctccggatgttcca 21279064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 25802904 - 25802581
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccctcgaatgttcca------------tcatttaaacggagga 96  Q
    |||||||||||||||||||||| || |||||||||||  |||||| |||||||||||||| || || |||||            ||||||||||||||||    
T  25802904 agaagaaggcaacatagtgaaccacgtagtatcaagcagggaatcattattaccaatcccccggatcttccaaaacaaaattattcatttaaacggagga 25802805  T
Q  97 agaggattctgagaacggg------atgaaaccttttgcaaattcnnnnnnnncctgagactttgaaactacctctttaaatggcacctcattcacagca 190  Q
    ||||||  |||||| ||||      ||||| |||||||||  |||        | |||||||||||||||||||||||||||||||||||||||||||||    
T  25802804 agaggaccctgagagcgggttttgtatgaagccttttgcacgttctttttcttc-tgagactttgaaactacctctttaaatggcacctcattcacagca 25802706  T
Q  191 gcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtacaggagcaccatctggcgccacaatactactgacatctaatgttt 290  Q
    |||||||||||||| |||| ||||||||| || ||||| |||| ||  |||| ||||||||||||||  ||||||| ||||||||||||||| |||||||    
T  25802705 gcctttgctagccaagtttgcataaaatctaactctttctgcaacattgggtctacaggagcaccattcggcgccataatactactgacatccaatgttt 25802606  T
Q  291 tttccttgactggggataaaatatg 315  Q
    |||||||||||||||||||||||||    
T  25802605 tttccttgactggggataaaatatg 25802581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 145 - 316
Target Start/End: Original strand, 21345565 - 21345737
Alignment:
Q  145 ctgagactttgaaactacctctttaaatggcacctcattcacagcagcctttgc-tagccatgtttccataaaatccaagtctttttgcagcaccgggtg 243  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||| ||||||||| | |||||| | || ||||||||     
T  21345565 ctgagactttgaaactacctctttaaatggtacctcattcaaagcagcctttgcctagccaagtttgcataaaatctatgtctttctacaacaccgggtc 21345664  T
Q  244 tacaggagcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatgc 316  Q
    || |||||||||||  |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  21345665 tataggagcaccattcggcgccacaatactactgacatctgaagttttttccttgactgaggataaaatatgc 21345737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 21345405 - 21345464
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccc 68  Q
    ||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  21345405 agaagaatgcaacatagtgaaccacgtagtatcaagcctggaatcattattaccaatccc 21345464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 37634896 - 37634991
Alignment:
Q  145 ctgagactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgg 240  Q
    ||||||||| ||||| |||| | ||||||| |||||  |  | || ||||||| |||||| || | ||||||||||||||||||||| ||||||||    
T  37634896 ctgagacttggaaacaacctgtgtaaatggtacctcggtagctgctgcctttgatagccaagtgtgcataaaatccaagtctttttgtagcaccgg 37634991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 51464953 - 51465123
Alignment:
Q  145 ctgagactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgt 244  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| ||||||||| || ||||| | || ||| |||| |    
T  51464953 ctgagactttgaaactacctctttaaatgacacctcattcacagcaacctttgctagccaagtttgcataaaatctaactctttctacaacactgggtct 51465052  T
Q  245 acaggagcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatg 315  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  51465053 acaggagcaccatccggcgccataatactactgacatttaatgttttttccttgactggggataaaatatg 51465123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 3570327 - 3570411
Alignment:
Q  144 cctgagactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtcttt 228  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||| | ||||||||    
T  3570327 cctgagactttgaaactacctctttaaatggcacctcattgacagcagcctttgctagccaaatttgcataaaagctaagtcttt 3570411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 3572095 - 3572180
Alignment:
Q  230 tgcagcaccgggtgtacaggagcaccatctggcgccacaatactactgacatctaatgttttttccttgactggggataaaatatg 315  Q
    |||| |||||||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  3572095 tgcaacaccgggtctacaggagtaccatccggcgccataatactactgacatctaatgttttttcctttattggggataaaatatg 3572180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 3570183 - 3570248
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcc-tggaatcgttattaccaatccctcgaa 73  Q
    |||||||||||||||||||||| |||||||||||||||  |||||| |||||||||||||| ||||    
T  3570183 agaagaaggcaacatagtgaaccacatagtatcaagccagggaatcattattaccaatcccccgaa 3570248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 51464800 - 51464859
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccc 68  Q
    |||||||||||||||||||||| || |||||||||||  |||||| ||||||||||||||    
T  51464800 agaagaaggcaacatagtgaaccacgtagtatcaagcagggaatcattattaccaatccc 51464859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 2289720 - 2289850
Alignment:
Q  148 agactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtaca 247  Q
    |||||| ||||| |||||| ||||||| |||||  |  | || ||||||| |||||| || | ||||||||| ||||||||||| |||||||| | ||      
T  2289720 agacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatagccaagtgttcataaaatctaagtctttttgtagcaccggatctatc 2289819  T
Q  248 ggagcaccatctggcgccacaatactactga 278  Q
      || ||||||||| ||||||||||||||||    
T  2289820 ttagaaccatctggagccacaatactactga 2289850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 14241807 - 14241946
Alignment:
Q  149 gactttgaaactacctctttaaatggcacctc---attcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgta 245  Q
    |||||||||| ||||||  |||| || |||||   ||| ||||||||||| |||| |||   || ||||||||  ||||| || || |||||||| ||||    
T  14241807 gactttgaaattacctcaataaaaggtacctcgttattaacagcagccttcgctaaccaatcttgcataaaatttaagtccttctgtagcaccggatgta 14241906  T
Q  246 caggagcaccatctggcgccacaatactactgacatctaa 285  Q
      |||||||| || || |||||||| ||||||||||||||    
T  14241907 ttggagcaccctccggagccacaatgctactgacatctaa 14241946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 40567 - 40890
Alignment:
Q  9 agaagaaggcaacatagtgaacaacatagtatcaagcctggaatcgttattaccaatccctcgaatgttcca------------tcatttaaacggagga 96  Q
    |||||||||||||||||||||| || |||||||||||  |||||| |||||||||||||| ||||| |||||            ||||||||||| ||||    
T  40567 agaagaaggcaacatagtgaaccacgtagtatcaagcagggaatcattattaccaatcccccgaatcttccaaaacaaaattattcatttaaacgaagga 40666  T
Q  97 agaggattctgagaacggg------atgaaaccttttgcaaattcnnnnnnnncctgagactttgaaactacctctttaaatggcacctcattcacagca 190  Q
    ||||||  |||||| ||||      ||||| |||||||||  |||        | ||||||||||||||||| ||||||||||| |||||||||||||||    
T  40667 agaggaccctgagagcgggttttgtatgaagccttttgcacgttctttttcttc-tgagactttgaaactacttctttaaatggtacctcattcacagca 40765  T
Q  191 gcctttgctagccatgtttccataaaatccaagtctttttgcagcaccgggtgtacaggagcaccatctggcgccacaatactactgacatctaatgttt 290  Q
    |||||||||||||| |||| ||||||||| || ||||| |||| ||| |||| ||| ||||||| ||| ||||||| ||||||||||||||||||| |||    
T  40766 gcctttgctagccaagtttgcataaaatctaactctttctgcaacactgggtctaccggagcactatccggcgccataatactactgacatctaatattt 40865  T
Q  291 tttccttgactggggataaaatatg 315  Q
    ||||||| |||||||||||||||||    
T  40866 tttccttaactggggataaaatatg 40890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 6297 - 6203
Alignment:
Q  145 ctgagactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccatgtttccataaaatccaagtctttttgcagcaccg 239  Q
    ||||||||| ||||| |||| | ||||||| |||||  |  | || ||||||| |||||| || | ||||||||||||||||||||| |||||||    
T  6297 ctgagacttggaaacaacctgtgtaaatggtacctcggtagctgctgcctttgatagccaagtgtgcataaaatccaagtctttttgtagcaccg 6203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University