View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_82 (Length: 360)
Name: NF18404_low_82
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 345
Target Start/End: Original strand, 34931644 - 34931973
Alignment:
| Q |
14 |
gcatcatggaagtgtggttggatccaaagttattccatataacaacaattaatagttcccaaaacaagatctcaattgcagttaaaaaacaatcaaaatc |
113 |
Q |
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| T |
34931644 |
gcatcatggaagtgtggttggatccaaagttattccatataacaacaattaatagttcccaaaacaagatctcaattgcagttaaaaaacaatcaaaatc |
34931743 |
T |
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| Q |
114 |
aaccttcattcaaagtcagtt-agcacttccataacaataaattcatatgcttccttcactcatgaatattaattatatatacaccaaaacacaacatta |
212 |
Q |
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| T |
34931744 |
aaccttcattcaaagtcagttaagcacttccataacaataaattcatatgcttccttcactcatgaatattaatcatatatacaccaaaacacaacatta |
34931843 |
T |
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| Q |
213 |
aactaaagtactatannnnnnncctccacatgtccaacatgtgtatcaatttcaacaatacaatttatacatgatggagaaaaaagacttacaatgatat |
312 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34931844 |
aactaaag---tatatttttttcctccacatgtccaacatgtgtatcaatttaaacaatacaatttatacatgatggagaaaaaagacttacaatgatat |
34931940 |
T |
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| Q |
313 |
acaaatttaaataaagatattaagataacatcc |
345 |
Q |
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| T |
34931941 |
acaaatttaaataaagatattaagataacatcc |
34931973 |
T |
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