View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_low_85 (Length: 353)
Name: NF18404_low_85
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_85 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 44965950 - 44966285
Alignment:
| Q |
18 |
atgtattcgacaagaaactcttttgaggatgaagtgtgatgtattgaactcaacatagaaagaaaatagagagaagagtaatgaaaatgtttgttattgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965950 |
atgtattcgacaagaaactcttttgaggatgaagtgtgatgtattgaactcaacatagaaagaaaatagagagaagagtaatgaaaatgtttgttattgt |
44966049 |
T |
|
| Q |
118 |
aaaggaaatgaaatgaaattagattaggagtgatgattagtaaaataggtttttcagtttgtgtggtggtg--------acacacagtgtacattagatg |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44966050 |
aaag-----gaaatgaaattagattaggagtgatgattagtaaaatag--------gtttgtgtggtggtgacacacacacacacagtgtacattagatg |
44966136 |
T |
|
| Q |
210 |
ggccataatgaaaagaatgaatctattttcagtttcagttgatatgggatcnnnnnnnggtcacactctgacgactcttcc-----tttgttgtgttgta |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44966137 |
ggccataatgaaaagaatgaatctattttcagtttcagttgatatgggatctttttttggtcacactctgacgactcttcctttgttttgttgtgttgtg |
44966236 |
T |
|
| Q |
305 |
ttgtgagttttgcactactttgcactctgcttgaggttgtattattatt |
353 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44966237 |
ttgtgagttttgcagtactttgcactctgcttgaggttgtattattatt |
44966285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University