View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_86 (Length: 347)
Name: NF18404_low_86
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_86 |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 331
Target Start/End: Complemental strand, 16697358 - 16697032
Alignment:
| Q |
5 |
atgatgtcaggaatattgattttatatgatggatagtttcatattttacataactattgtgcttaacaactttctatgctctctttcaatttctccaata |
104 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
16697358 |
atgatgtcaggaatattgattttatatgatggatagtctcatattttacataactattgtgcttaaccacttgctatgctctctttcaatttctccaata |
16697259 |
T |
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| Q |
105 |
aattatccaaaattaacttcccatttgtttaaatannnnnnngtcctctttgttggattttagaacatccttggttgtctttgttacccgtgaagaagat |
204 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16697258 |
aattatccaaaattaacttcccatttgtttaaatatttttttgtactctttgttggattttagaacatccttggttgtctttgttacccgtgaagaagat |
16697159 |
T |
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| Q |
205 |
gagtggttttcttattaacaacctccaaccctaaaattttatacacatgaaatgatacacacatttagagcatgtcttccacattgcttcaaggtacaca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
16697158 |
gagtggttttcttattaacaacctccaaccctaaaattttatacacatgaaatgatacacacgtttagagcatgtcttccatattgcttcaaggtacaca |
16697059 |
T |
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| Q |
305 |
caaagctatttttcttcttatccttcc |
331 |
Q |
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||||||||||||||||||||||||||| |
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| T |
16697058 |
caaagctatttttcttcttatccttcc |
16697032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 331
Target Start/End: Original strand, 37256910 - 37257224
Alignment:
| Q |
5 |
atgatgtcaggaatattgattttatatgatggatagtttcatattttacataactattgtgcttaacaactttctatgctctctttcaatttctccaata |
104 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||| |
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| T |
37256910 |
atgatgtcaggaatattgattttatatgatggatagtctcatattttacataactattgcgcttaaccacttgctatgctctcttccaatttctccaata |
37257009 |
T |
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| Q |
105 |
aattatccaaaattaacttcccatttgtttaaatannnnnnng-tcctctttgttggattttagaacatcctt-ggttgtctttgttacccgtgaagaag |
202 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37257010 |
aattatccaaaattaacttcccatttgtttaaatattttttttatcttctttgtgggattttagaacatcctttggttgtctttgttacccgtgaagaac |
37257109 |
T |
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| Q |
203 |
atgagtggttttcttattaacaacctccaaccctaaaattttatacacatgaaatgatacacacatttagagcatgtcttccacattgcttcaaggtaca |
302 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||| |
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| T |
37257110 |
attagtggttttcttattaacaacctccaaccctaaaattttatagagatgaaatgatacacacatttagagcatgtc--------------aacgtaca |
37257195 |
T |
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| Q |
303 |
cacaaagctatttttcttcttatccttcc |
331 |
Q |
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| T |
37257196 |
cacaaagctatttttcttcttatccttcc |
37257224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 19808 - 19766
Alignment:
| Q |
5 |
atgatgtcaggaatattgattttatatgatggatagtttcata |
47 |
Q |
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| T |
19808 |
atgatgtcaggaatattgattttatatgatggatagtttcata |
19766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 32903 - 32945
Alignment:
| Q |
5 |
atgatgtcaggaatattgattttatatgatggatagtttcata |
47 |
Q |
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| T |
32903 |
atgatgtcaggaatattgattttatatgatggatagtttcata |
32945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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